PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094754001
Common NameGSBRNA2T00094754001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 545aa    MW: 61704.5 Da    PI: 4.4304
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094754001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.2e-08385428145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r rW+++E + ++++++ +G +  + + + ++k+Rtl q+k+++ 
  GSBRNA2T00094754001 385 RTRWSKQETQVFYEGIQAFGIN-LSMVQQFLPKRRTLHQIKLKYK 428
                          78******************99.********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159636.6E-23378463No hitNo description
Gene3DG3DSA:1.10.10.606.9E-5381428IPR009057Homeodomain-like
SMARTSM007171.1E-5384433IPR001005SANT/Myb domain
SuperFamilySSF466894.91E-7386437IPR009057Homeodomain-like
CDDcd001670.00611387428No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MFLLSLVLTI ISYFLLQAPK KDKVPPPSSK PAKSGGGNHN KKDATGVAYV LHACSELDSE  60
GHRCDEGTEA VLAFPDDPRR QDSATFGDFV TSETDEVINA QTQRMQTEGE VECHWDMETL  120
DIVQEEGITS AYEEQHSGKF QPKPRLLDTV IEEEPGSHYS VDDTTGANQS ECMVNEESRN  180
DECTNTAFYG EYQEEEHNIP QVHKESAPDV LEQEHRVVSP SNNDTVMGQG ETQSNEAATR  240
TDKKGGKKRG RKKKATTNEE EEEEEEANKS PEKKKKLKHS SRRQKKTLEK ELLETPDDDI  300
KHLPIRDMLR LVAYKESLEK KEAKGAPVVP PTQESNNTNA SWDDQYYSQG FDAQDEFGME  360
EGENHVQVKP DSPVNYQTYM KKTPRTRWSK QETQVFYEGI QAFGINLSMV QQFLPKRRTL  420
HQIKLKYKLE ERKNPLKIDD ALSTPRKDLT RYHIVLKKLQ QEAAAAKEEE EAEEDAEEEA  480
ETTSDVPENP ESEKTDERAG DGVAGVKELD GEDVENGVRS DSGDQLDENE EDDDDFWNSY  540
KSEM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250277RKKKATTNEEEEEEEEANKSPEKKKKLK
2272282KKKKLKHSSRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.6780.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094754001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661043.10.0transcription factor TFIIIB component B''-like isoform X1
TrEMBLA0A078FV650.0A0A078FV65_BRANA; BnaA09g05160D protein
STRINGBo01097s050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-136MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]