PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00094695001

Common Name

GSBRNA2T00094695001, LOC106366080

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 202aa MW: 22726.3 Da PI: 5.4195

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00094695001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.4e-16	106	156	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r +lg+f t +Aa+a++ + kl+g GSBRNA2T00094695001 106 HYRGVRRRP-WGKFAAEIRDPAK--KGSRMWLGTFETDIDAARAYDYTAFKLRG 156 7******.******954..34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.1E-30	105	165	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-33	106	170	IPR001471	AP2/ERF domain
CDD	cd00018	4.66E-28	106	164	No hit	No description
SuperFamily	SSF54171	9.15E-22	106	165	IPR016177	DNA-binding domain
Pfam	PF00847	4.1E-11	106	156	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.263	106	164	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-12	107	118	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-12	146	166	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MITFEESSDL EVIHKHLFED LMIPDGFMED FVFDDAAFVT GLLSLEPFNP VPKQEPNSPV 60 LDPDSCVQEF LQIEAESSSS STTTTSPEAE TVSNRKRPKR VEETRHYRGV RRRPWGKFAA 120 EIRDPAKKGS RMWLGTFETD IDAARAYDYT AFKLRGRKAV LNFPLDAGKY DAPINSCRKR 180 RRNDVPEPQG TTTSNSSSSS N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-28	103	165	2	64	ATERF1
3gcc_A	3e-28	103	165	2	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	181	RKRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14208	0.0	flower\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00094695001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB012239	0.0	AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBank	AY045968	0.0	AY045968.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBank	AY079321	0.0	AY079321.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013661097.1	1e-148	ethylene-responsive transcription factor ERF107
Swissprot	Q9FKG2	1e-108	EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBL	A0A078FV13	1e-147	A0A078FV13_BRANA; BnaA09g05710D protein
TrEMBL	A0A3P5XVW6	1e-147	A0A3P5XVW6_BRACM; Uncharacterized protein
STRING	Bra035919.1-P	1e-127	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61590.1	1e-107	ERF family protein

Link Out ? help Back to Top
Entrez Gene	106366080

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Suh MC,Go YS DEWAX-mediated transcriptional repression of cuticular wax biosynthesis in Arabidopsis thaliana. Plant Signal Behav, 2014. 9(8): p. e29463 [PMID:25763625] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins. PLoS ONE, 2016. 11(4): p. e0153216 [PMID:27073862] Ju S,Go YS,Choi HJ,Park JM,Suh MC DEWAX Transcription Factor Is Involved in Resistance to Botrytis cinerea in Arabidopsis thaliana and Camelina sativa. Front Plant Sci, 2017. 8: p. 1210 [PMID:28744297] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]