PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00093609001

Common Name

GSBRNA2T00093609001, LOC106440839

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 185aa MW: 21082.2 Da PI: 7.64

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00093609001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.3e-14	25	76	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +h e+E+ RR+++ s ++ Lr+llP + +++ s ++ L +Av+YI++Lq GSBRNA2T00093609001 25 KIMHREVEKHRRQEMASLYASLRSLLPLEF--IQGRRSTSDQLNEAVNYINHLQ 76 568***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.262	23	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-13	23	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.95E-8	25	76	No hit	No description
Pfam	PF00010	4.5E-11	26	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	27	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-6	29	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MADFPEKGRK RRKEVRVGNE ENMEKIMHRE VEKHRRQEMA SLYASLRSLL PLEFIQGRRS 60 TSDQLNEAVN YINHLQGNIK DMSSKRDDLM LLSGQSFESR NELRSDNSNH VVIRPCFVGV 120 EIVFSVLQTP LSSVLHVLSE HGLCVLNCIS SNVNGRLIHT LQAEVNDLAL VDFAELKIYL 180 LRLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	13	RKRRKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00093609001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137522.1	1e-132	PREDICTED: transcription factor bHLH118 isoform X1
Refseq	XP_013738055.1	1e-132	transcription factor bHLH118
Refseq	XP_018513265.1	1e-132	PREDICTED: transcription factor bHLH118 isoform X1
Refseq	XP_022572640.1	1e-132	transcription factor bHLH118-like
Swissprot	Q9STJ7	1e-77	BH118_ARATH; Transcription factor bHLH118
TrEMBL	A0A078IIB1	1e-131	A0A078IIB1_BRANA; BnaA03g47370D protein
TrEMBL	A0A397L194	1e-131	A0A397L194_BRACM; Uncharacterized protein
TrEMBL	M4DRM4	1e-131	M4DRM4_BRARP; Uncharacterized protein
STRING	Bra019167.1-P	1e-132	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	4e-80	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106440839

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]