PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00092962001 | ||||||||
Common Name | GSBRNA2T00092962001, LOC106398510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 165aa MW: 18891.9 Da PI: 10.3068 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 57.5 | 3.8e-18 | 9 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgk 90 F +ye+++d++l+++isws++++sfv++d++e+ +k+L+++F+ ++++ F+ L+ gF +++ +e+ eF h++ F +gk GSBRNA2T00092962001 9 FYAGVYEVVDDPSLDSIISWSKSNKSFVIWDPKELVEKILSRFFR-NKLSQFISDLESHGFVRIEGSEH--------LEFGHEQyFVRGK 89 77889***************************************8.67999*************99996........6****9989**** PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 el+ k++rk GSBRNA2T00092962001 90 PELMIKLRRKVA 101 *********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.2E-24 | 5 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.82E-19 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.8E-20 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.0E-17 | 9 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.9E-5 | 9 | 32 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.9E-5 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MPWMGMSQFY AGVYEVVDDP SLDSIISWSK SNKSFVIWDP KELVEKILSR FFRNKLSQFI 60 SDLESHGFVR IEGSEHLEFG HEQYFVRGKP ELMIKLRRKV ASARVKKDIK AAKEAEKNGS 120 VGDQPPIRKM SLKDALIRFD QIMRPSKKSS KKAKAKTPLE TIDE* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.19089 | 2e-62 | flower| seed |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00092962001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013694504.1 | 1e-117 | heat stress transcription factor A-4a | ||||
TrEMBL | A0A078IK12 | 1e-115 | A0A078IK12_BRANA; BnaA01g35560D protein | ||||
TrEMBL | A0A3P5ZAK5 | 1e-115 | A0A3P5ZAK5_BRACM; Uncharacterized protein | ||||
STRING | Bra030021.1-P | 1e-115 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77570.1 | 5e-24 | Winged helix-turn-helix transcription repressor DNA-binding |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106398510 |
Publications ? help Back to Top | |||
---|---|---|---|
|