PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092943001
Common NameGSBRNA2T00092943001, LOC106418234
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 672aa    MW: 72618.1 Da    PI: 6.3021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092943001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.8e-32261318260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK vkgse+prsYY+Ct ++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  GSBRNA2T00092943001 261 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCPVKKKVERSR-EGHITEIIYKGAHNHSK 318
                          8****************************************.***************85 PP
2WRKY103.98.9e-33477535159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  GSBRNA2T00092943001 477 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 535
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-29254319IPR003657WRKY domain
SuperFamilySSF1182901.83E-25258319IPR003657WRKY domain
SMARTSM007742.7E-35260318IPR003657WRKY domain
PROSITE profilePS5081123.491261319IPR003657WRKY domain
PfamPF031061.5E-24261316IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36462537IPR003657WRKY domain
SuperFamilySSF1182901.83E-28469537IPR003657WRKY domain
PROSITE profilePS5081138.136472537IPR003657WRKY domain
SMARTSM007741.8E-37477536IPR003657WRKY domain
PfamPF031068.6E-25478535IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MSGFDENVAV MGEWVPCNPT PGTLFSSSIG EDKTSKRVLE RELSLNHGQV TGLQEDITGN  60
NDNNNDSSQN NNVSRGGLRE RIAARAGFNT PKLNTENIRS NAGFSMDSSS LRSPCLTISS  120
PGLSPATLLE SPVFLSNPLA QPSPTTGKFP FLPGVNSNGL FSDKAKDEFF DNIGASFTFQ  180
PVSRSSSSFF QGGATEMVPV DYGSYNNRSS HQTPEDVTKN VGYTGQKRKT SETVDHQEEE  240
EEVEEEQRRG GDSMVGGAPA EDGYNWRKYG QKLVKGSEYP RSYYKCTNPN CPVKKKVERS  300
REGHITEIIY KGAHNHSKPP PNRRSGMQVD GTDQAEQQQQ QQRDSAPTWV NCNNTQQQVE  360
SNENNVQEGF EYGNQSGSVQ AQTGGGQFES GDGNGGVVVV DASSTFSNEE DEDDRGTHGS  420
ASLGYDGGGG GGGGGEGDES ESKRRKLEAY AAEMSGATRA IREPRVVVQT ASDVDILDDG  480
YRWRKYGQKV VKGNPNPRSY YKCTAPGCTV RKHVERASHD LKSVITTYEG KHNHDVPAAR  540
NSSHGGGGNG NSGGSAAQPH HYHEQPRGRY ERQLTASNHQ SPFGRPFSFQ PHLGPPSGYS  600
FGLGQTGLAN LSLPGLGFGQ GKLPGLPHPY MTQPGGMSEA MMHRGMEPKV EPVSETGQSV  660
YNQIMSRLPQ I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36261538878Probable WRKY transcription factor 4
2lex_A3e-36261538878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092943001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121660.0FJ012166.1 Brassica napus WRKY2 transcription factor (WRKY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022567437.10.0probable WRKY transcription factor 2
RefseqXP_022570360.10.0probable WRKY transcription factor 2
RefseqXP_022570361.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A078IK000.0A0A078IK00_BRANA; BnaC09g53550D protein
STRINGBo9g123740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]