PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00092506001 | ||||||||
Common Name | GSBRNA2T00092506001, LOC106379846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 232aa MW: 25672 Da PI: 10.4301 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.7 | 3.5e-32 | 122 | 178 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RR++Rakle+++kl +ksrkpylheSRh hAl+R+RgsgGrF GSBRNA2T00092506001 122 NEPMFVNAKQYHAILRRRKHRAKLEAQNKL-IKSRKPYLHESRHLHALKRARGSGGRF 178 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.0E-36 | 120 | 181 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.155 | 121 | 181 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.0E-27 | 123 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.7E-23 | 124 | 146 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 126 | 146 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.7E-23 | 155 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MQVPTNSNIQ GSQSFSLTKN LMMPCKMKHS GLQLQDQDSS STQSTEESGG GYIVSPQGKA 60 IASYTKSTTT SSMVSHDSVF PPTYFNGFLA PEYASQSTVL PHVEMMGLVT SRVPLPHNYQ 120 ENEPMFVNAK QYHAILRRRK HRAKLEAQNK LIKSRKPYLH ESRHLHALKR ARGSGGRFLN 180 TKKLQESSKS LCSSLTTPSS SSDRDNMFQN APFRFSGYPS THHVSALMSG T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-21 | 122 | 183 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19048 | 3e-71 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant, except roots. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00092506001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC787684 | 1e-124 | KC787684.1 Brassica napus transcription factor subunit NF-YA5B (NF-YA5B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675163.1 | 1e-172 | nuclear transcription factor Y subunit A-5 isoform X1 | ||||
Swissprot | Q9SYH4 | 1e-110 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | A0A078JTP5 | 1e-170 | A0A078JTP5_BRANA; BnaAnng31560D protein | ||||
TrEMBL | A0A3P5ZDJ8 | 1e-170 | A0A3P5ZDJ8_BRACM; Uncharacterized protein | ||||
STRING | Bra014368.1-P | 1e-141 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11633 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 2e-90 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Entrez Gene | 106379846 |