PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092355001
Common NameGSBRNA2T00092355001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 603aa    MW: 69188.1 Da    PI: 4.9032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092355001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025573592221
                          EETTTTEEESSHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                          +C  Cg+ F ++s L +Hi 
  GSBRNA2T00092355001 573 ECDRCGEEFESRSKLFKHIA 592
                          5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.0E-22589IPR001623DnaJ domain
SuperFamilySSF465656.02E-226111IPR001623DnaJ domain
SMARTSM002712.5E-181073IPR001623DnaJ domain
PROSITE profilePS5007618.4711181IPR001623DnaJ domain
CDDcd062571.70E-141170IPR001623DnaJ domain
PfamPF002264.0E-191278IPR001623DnaJ domain
PRINTSPR006254.8E-131331IPR001623DnaJ domain
PRINTSPR006254.8E-133146IPR001623DnaJ domain
PRINTSPR006254.8E-135373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.19E-14300350No hitNo description
SMARTSM004517.9E-8305339IPR003604Zinc finger, U1-type
PfamPF121713.3E-10307333IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82308332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280310332IPR007087Zinc finger, C2H2
SMARTSM003553.6572596IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702572601IPR007087Zinc finger, C2H2
PROSITE patternPS000280574596IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MASSSRTEKR CLYEILDVNK ESSPEEIRSS YRRLALQRHP DKLIKAGGIS EADATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADQG SAGGSKSGGM PGGSVPDLFA FFSTSVYSGY  120
SDTGKGFYKV YFDVFNSVYL NEIKFARTLG LSVDSVREAP IMGNLESPYS QVTAFYNYWL  180
GFSTVMDFCW VDEYDTMAGP NRRMRRKMEE ENKKVRKKAK REYNETVRGL AAFVKKRDKR  240
VVDMMVKKSA EMELKKAEER ERKKKMEKER LERAMNYEEP DWAKAQDEED EEVEEDGGDD  300
GKKKSEQLYC IVCSKKFKSE KQWKNHEQSK KHKEKVEELR ESFSDVQEEE EEIDEIPETV  360
EELEELNVED EVVGVADETD DEYFMAEEDV KRSSESEDED GDKMVEKNKR KNVVSREEDE  420
VHVEIESDSE FDNQKSTTGR NRKGKKERNK RNAGKDITDD ANKTQISMDD GDNSDDNADA  480
TDSASGAVEE TQKDEAEPME YDNRKSTGRR RRSKKGKDKS SEADDTQKAM EDSHSETLED  540
RSEYIEHKKA PRSKKSTRGM KSKGTSKKAS NNECDRCGEE FESRSKLFKH IADTGHATVK  600
SR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKVRKKAKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.273180.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092355001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620745.10.0PREDICTED: dnaJ homolog subfamily C member 21-like
RefseqXP_013620746.10.0PREDICTED: dnaJ homolog subfamily C member 21-like
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A078IGI90.0A0A078IGI9_BRANA; BnaA02g16850D protein
STRINGBo2g081060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]