PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00091693001 | ||||||||
Common Name | GSBRNA2T00091693001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 321aa MW: 35591.2 Da PI: 7.4996 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.9e-18 | 51 | 111 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ GSBRNA2T00091693001 51 KPRWNPKPEQIRILESIFNSgIVNPPREEIQRIRTRLqeygQIGDANVFYWFQNRKSRAKH 111 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 111.7 | 4e-36 | 50 | 112 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P++eeiqri+++L+eyG+i+d+NVfyWFQNrk+R ++k GSBRNA2T00091693001 50 PKPRWNPKPEQIRILESIFNSGIVNPPREEIQRIRTRLQEYGQIGDANVFYWFQNRKSRAKHK 112 579**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.398 | 47 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-12 | 48 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-6 | 49 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.57E-8 | 50 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-6 | 51 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-15 | 51 | 111 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MSSSNKNWPS MFKSKPCNKH HHRDMETPSS MPYSNCNTPS PFSSDRVPDP KPRWNPKPEQ 60 IRILESIFNS GIVNPPREEI QRIRTRLQEY GQIGDANVFY WFQNRKSRAK HKLRVLKKNP 120 KMLGCNPSKT RKEKIITPND NPTDPCFGLV NHETGLFPGQ NNELVITEPA SFLYPDDNNP 180 SLTQSAFGFG GFVVPVVAEE RLELAGTSNG VNMNIPEINF GGGENGYFPN SVPVTVPLTI 240 NQSQVSSGGG DIGDYVSPVR LTVFINDMPF DVAAGLFNVK EAFGNNAMLI NSFGQPILTD 300 EFGVTFQPLQ NGAVYYLVSF * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the egg cell and the central cell of the embryo sac (PubMed:14711878). After fertilization, it is expressed in the zygote (PubMed:14711878). After the first division of the zygote, it is detected exclusively in the basal daughter cell, while WOX2 is expressed in the apical daughter cell (PubMed:14711878). Through the 16-cell stage, it is expressed in all descendants of the basal daughter, the developing suspensor and the hypophyseal cell (PubMed:14711878). After the hypophysis had divided, expression stops in descendants, but remains present in the extra embryonic suspensor (PubMed:14711878). Moreover it is found in the cellularized endosperm of the micropylar region during the globular and heart stages of embryogenesis (PubMed:14711878). Not expressed later in embryogenesis or in postembryonic stages (PubMed:14711878). Activated in the zygote after fertilization (PubMed:21316593). {ECO:0000269|PubMed:14711878, ECO:0000269|PubMed:21316593}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in the egg cell (PubMed:21316593). Not detected in the pollen tube (PubMed:21316593). Expressed in the zygote, the basal cell, and later the suspensor (PubMed:21802295). Expressed in all suspensor cells, except the hypophysis, and in the embryo surrounding region (ESR) endosperm cells (PubMed:22427333). Strongly expressed in the suspensor cells, with a weak expression also detected throughout the developing embryo (PubMed:22827849). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:21802295, ECO:0000269|PubMed:22427333, ECO:0000269|PubMed:22827849}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00091693001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009128835.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 8 | ||||
Refseq | XP_013646635.1 | 0.0 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q6X7J5 | 1e-154 | WOX8_ARATH; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A078ICZ2 | 0.0 | A0A078ICZ2_BRANA; BnaA02g24210D protein | ||||
STRING | Bo2g127670.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14262 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45980.1 | 1e-147 | WUSCHEL related homeobox 8 |
Publications ? help Back to Top | |||
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