PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091521001
Common NameGSBRNA2T00091521001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 338aa    MW: 37589.2 Da    PI: 10.105
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091521001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.5e-30270327359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++ +++++ YegeHnh 
  GSBRNA2T00091521001 270 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDEASMLIVSYEGEHNHA 327
                          9*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-15229266IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.9E-32256327IPR003657WRKY domain
PROSITE profilePS5081128.954263329IPR003657WRKY domain
SuperFamilySSF1182901.28E-25266327IPR003657WRKY domain
SMARTSM007749.7E-36268328IPR003657WRKY domain
PfamPF031069.0E-26270326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNDPK SLLVETREAV IKFKRVTSLL TRGLGGQRKI  60
KKLNSNNYYK FMSPLLPQHI FLESPICSNN AITGCVPVLA PKPLQVIPPA APSYGEQRPV  120
HPPPMMLNHK MCVDKSFLEL KPPSLRAVDQ KPYQFIRNHQ QGVYYRSNSG LNLKFDGCYS  180
PSVSNGSRSF VSSLSMDGSV TDYDRNSFHL IGLPQGSDHI SQHSRRTSCS GSLKCGNKSK  240
CHCSKKRKLR VKRSIKVPAI SNKIADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSSVRGC  300
PARKHVERCV DEASMLIVSY EGEHNHARML SSQSAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19261326771WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.84990.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091521001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9124160.0EU912416.1 Brassica napus WRKY74-1 transcription factor (WRKY74-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288836.10.0probable WRKY transcription factor 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A078IHR20.0A0A078IHR2_BRANA; BnaC07g27510D protein
STRINGBo7g093090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.10.0WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]