PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00091355001 | ||||||||
Common Name | GSBRNA2T00091355001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 351aa MW: 39457 Da PI: 4.8276 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.7 | 5.2e-19 | 6 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk++ ++++s +v+p ++ +e ++ +kt l+ ++g W+v + k+++++++++GW +Fv++ngL++gD+++F +dg+++f GSBRNA2T00091355001 6 FFKIF--LSHFSSESMVIPASYYDELPLV--LPKTALLQGSDGgCFWKVAM--IKRRDEVYFGQGWAKFVEDNGLRDGDVLTFVYDGSRSF- 90 88888..89999999*********99998..8889****977769******..999999***************************98888. PP .EEEEE CS B3 92 lvvkvf 97 +v ++ GSBRNA2T00091355001 91 -TVDIY 95 .77665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-20 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.72E-17 | 4 | 95 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 4 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.39E-21 | 4 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.8E-16 | 6 | 95 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-21 | 6 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.79E-7 | 248 | 333 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-5 | 248 | 340 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.031 | 254 | 346 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRDEVY 60 FGQGWAKFVE DNGLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD 120 DKEDTNTSSE PEMAQTVPNA TNQEDSTIIE PEVAQRVPRT RSKGKKRVVV QDSDDSFISE 180 DSDSLSDSSY SPPNDDTLLD VTPKVTNSRK KGELRSVNSN VGSTSNSSLS VSRKRPSTIK 240 NPEVYLDDPN NVCFETTVKK RIYDLSVPSQ TVRDYCLKFQ DYVYYIDNHE NGMLEARVAT 300 WQDYRVSIKK WERICERNGL KKGDRLLCEL FRKEGLVYAV KIHVVTTTTS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 9e-14 | 6 | 96 | 11 | 100 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00091355001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013669917.1 | 0.0 | B3 domain-containing protein At4g34400-like | ||||
TrEMBL | A0A078IF45 | 0.0 | A0A078IF45_BRANA; BnaA01g07630D protein | ||||
STRING | Bo1g016660.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6555 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 5e-40 | B3 family protein |
Publications ? help Back to Top | |||
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