PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091267001
Common NameGSBRNA2T00091267001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 421aa    MW: 49309.2 Da    PI: 10.4706
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091267001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.25.8e-201691787
             trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                         m++++r++ lk  lWee+s+km+e g++rs+k+Ckek+en+ k++k++k g+ +++  + +t+++fd+lea
  GSBRNA2T00091267001  1 MDKTFRDSTLKSSLWEEISRKMMELGYKRSSKKCKEKFENVYKYHKRTKYGRTRKS--KGKTYRFFDELEA 69
                         7899*************************************************975..4457******985 PP
2trihelix107.21.1e-33271356187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev aLi++r+++e ++ ++  k+plWee+s+ mr+ g++rspk+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  GSBRNA2T00091267001 271 RWPKTEVEALIRIRKNLEANYLENGTKGPLWEEISAEMRRFGYNRSPKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 356
                          8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.89E-15149No hitNo description
PfamPF138371.4E-12369No hitNo description
PROSITE profilePS500905.2621542IPR017877Myb-like domain
SMARTSM007173.0E-4268330IPR001005SANT/Myb domain
PROSITE profilePS500907.758270328IPR017877Myb-like domain
CDDcd122033.86E-24270335No hitNo description
PfamPF138371.8E-23270357No hitNo description
Gene3DG3DSA:1.10.10.608.4E-5270327IPR009057Homeodomain-like
SuperFamilySSF466895.57E-6270362IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDKTFRDSTL KSSLWEEISR KMMELGYKRS SKKCKEKFEN VYKYHKRTKY GRTRKSKGKT  60
YRFFDELEAF ETINSYPPGS KFQPAKSPAA TTTTRQMFHL DGIFLGITHL DVPKTVSNQQ  120
VSVKPITTNP TFLAKQPSLR ITFPFYNNNH TTKVDTGFKP PSRDLLNNVS SLNLFSSSTS  180
SSDEEEDQEK RSRKKRKYWK GLFTKLTKEL MEKQEKMHKR FLKALESRER ENLKRRSLEG  240
PRGGQEQQPH QQNYKIGTYN GNHSVSPCSS RWPKTEVEAL IRIRKNLEAN YLENGTKGPL  300
WEEISAEMRR FGYNRSPKRC KEKWENINKY FKKVKESNKK RPLDSKTCPY FHQLEALYNE  360
RNKTGPLPIL PLLVTQPRQF LLSQETKAQF ETNQMDKISE FEIVLNKTSS PMDINNNLFT  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KRSSKKCKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.123021e-71leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091267001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892031e-179AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681523.10.0LOW QUALITY PROTEIN: trihelix transcription factor GT-2
SwissprotQ391172e-89TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A078IEY20.0A0A078IEY2_BRANA; BnaC06g18740D protein
TrEMBLA0A3P6GBR30.0A0A3P6GBR3_BRAOL; Uncharacterized protein
STRINGBo6g083670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-91Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]