PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091264001
Common NameGSBRNA2T00091264001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 569aa    MW: 63792.7 Da    PI: 5.6509
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091264001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.21.1e-2850134187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  GSBRNA2T00091264001  50 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 134
                          8********************************************************************975544..6*******85 PP
2trihelix104.38.6e-33366451187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k e+ aLi++r++++++++++  k+plWee+s+ m++ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  GSBRNA2T00091264001 366 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMKRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 451
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1247109IPR001005SANT/Myb domain
CDDcd122034.46E-2249114No hitNo description
PfamPF138375.4E-1849135No hitNo description
PROSITE profilePS500906.95749107IPR017877Myb-like domain
PROSITE profilePS500907.155359423IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-4363422IPR009057Homeodomain-like
SMARTSM007170.0023363425IPR001005SANT/Myb domain
PfamPF138373.7E-22365452No hitNo description
CDDcd122031.10E-26366430No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MMQLGGTTTT AATSAAPPPS NDSAAAAAAA TVGAFEVSEE MNDRGFGGNR WPRQETLALL  60
KIRSDMGIAF RDASVKGPLW EEVSRKMAEL GYIRNAKKCK EKFENVYKYH KRTKEGRTGK  120
SEGKTYRFFD QLEALETRPT SSSIHHQQQQ QPPPQTQPQP LQPQPPLRPH NNNSPMFSTS  180
PPVTTITPQI TNTTFPPYTQ PANVPSFPNI SGDFLSDNST SSSRSTSSDF FERLTRQVVD  240
KQEELQRKFL EAVEKREDER LVREESWRVQ EIARINRERD ILAQERSMSA AKDAAVMAFL  300
QKLSEKPNPQ GQSIIPQPQP QPQQAPSQMQ PTQPVTPTVD TSKTDNGDQN MTPVSASAAG  360
AVSSSRWPKV EIEALIKLRT NLDSKYQENG PKGPLWEEIS AGMKRLGFNR NSKRCKEKWE  420
NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRERNKFH TNNNVIASSS STSGLVKPDN  480
SVPLMVQPEQ QWPPAMATTT VTSTVAATAQ PDQHPPPQPL DKNFDDEEGT DGEEYDDEED  540
YEENEEEEGG EFELMPSNNN NNKPTNNM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.72430.0flower| leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091264001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892030.0AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591974.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-140TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A078ICF30.0A0A078ICF3_BRANA; BnaC06g18750D protein
STRINGBo6g083690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]