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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00090682001 | ||||||||
Common Name | GSBRNA2T00090682001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 181aa MW: 21409.7 Da PI: 8.7677 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 57.1 | 3.6e-18 | 54 | 92 | 37 | 75 |
CG-1 37 gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 +L++rk +ryfrkDG++ +kkkdgktv+EdhekLK GSBRNA2T00090682001 54 RITLLFDRKELRYFRKDGHNRRKKKDGKTVKEDHEKLKL 92 4579**********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 17.173 | 24 | 155 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.9E-4 | 36 | 118 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.3E-12 | 56 | 92 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF00069 | 9.4E-7 | 90 | 128 | IPR000719 | Protein kinase domain |
SuperFamily | SSF56112 | 7.15E-12 | 91 | 141 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:1.10.510.10 | 8.7E-10 | 91 | 131 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 104 | 116 | IPR008271 | Serine/threonine-protein kinase, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MLTWSLVFSL RCLSSKIFYR YFHIISGSPC FNLSGMFSGE YEMFPERLKQ GDFRITLLFD 60 RKELRYFRKD GHNRRKKKDG KTVKEDHEKL KLLLAVKQCH EKGICHGDIK CENVLVTSWN 120 WLYLADFASF KPTYIPYDDP SDFSFFHDTR ERRLSLCPWY ISEVAVTGVR LMIEAEYSWG 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dfz_B | 2e-18 | 58 | 153 | 109 | 193 | Serine/threonine-protein kinase VPS15 |
5kc2_B | 2e-18 | 58 | 153 | 109 | 193 | Serine/threonine-protein kinase VPS15 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 78 | RRKKKD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In anthers, barely detected in microsporocytes at stage 6, but accumulates strongly in tetrads at stage 7, microspores, mature pollen grains, and tapetum cells. Also detectable in the growing pollen tubes on the stigma. {ECO:0000269|PubMed:21833541, ECO:0000269|PubMed:22361507}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in anthers, pollen grains and pollen tubes, and, to a lower extent, in other tissues and organs including seedlings, roots, stems, leaves, flowers, pitils and siliques. {ECO:0000269|PubMed:21833541, ECO:0000269|PubMed:22361507}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Serine/threonine-protein kinase required for cytoplasm to vacuole transport (Cvt) and autophagy as a part of the autophagy-specific VPS34 PI3-kinase complex I (By similarity). Required for pollen development and germination, probably via the modulation of phosphatidylinositol 3-phosphate (PI3P) formation and vacuolar organization (PubMed:21833541, PubMed:22361507). {ECO:0000250|UniProtKB:P22219, ECO:0000269|PubMed:21833541, ECO:0000269|PubMed:22361507}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00090682001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254602 | 1e-44 | AC254602.1 Capsella rubella clone CAP08-D12, complete sequence. | |||
GenBank | AL161574 | 1e-44 | AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70. | |||
GenBank | CP002687 | 1e-44 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022545873.1 | 3e-37 | probable serine/threonine-protein kinase vps15 | ||||
Swissprot | Q9M0E5 | 2e-34 | VPS15_ARATH; Serine/threonine-protein kinase VPS15 | ||||
TrEMBL | A0A078FUZ2 | 1e-131 | A0A078FUZ2_BRANA; BnaA09g29570D protein | ||||
STRING | Bra024655.1-P | 1e-87 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 3e-15 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |