PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090612001
Common NameGSBRNA2T00090612001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 404aa    MW: 45109.4 Da    PI: 8.7379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090612001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064345367123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00090612001 345 HECPICFRVFKSGQALGGHKRSH 367
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.14E-6535No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5632IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.32931IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-4932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.07189111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78389116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-790111No hitNo description
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.001291113IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-7340367No hitNo description
SMARTSM003550.14345367IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974345367IPR007087Zinc finger, C2H2
PfamPF139123.3E-10345367IPR007087Zinc finger, C2H2
PROSITE patternPS000280347367IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEQFKERKFV CKFCSKRFAC GKSLGGHIRT HMNKENSADS DEDEHNKLRI DENGGQASYG  60
LRENPKKNKK FVVQRDMMAL KHQHQQQLLY CRECGKGFTS SKALCGHMAC HSEREKIVMD  120
SQSDTEASSS PIRRRSKRAV NHHHNHKDDA FVDASSDADE IEPEQEETAL SLMMLSRDSS  180
FKKAHNLVVN SLAESSDNNS VILETKSSSG EQLKILNVKN VEEFCKKDKL GGVDNGDVLY  240
DSDNSDSGYF RNGPKKLDSD VSVDGFLKNN AFSNKFRNEW SGSGSGSGRS STKYDLRQSK  300
RGGDQLSLET DSCADTNRSI KKIHNSKPPM VKKPSGGVKK KSKGHECPIC FRVFKSGQAL  360
GGHKRSHFIG SQDHRTLVIQ QHHQVAHDMH TLIDLNLPAP IDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090612001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609660.0HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646762.10.0zinc finger protein ZAT4-like
RefseqXP_013646764.10.0zinc finger protein ZAT4-like
TrEMBLA0A078FNZ00.0A0A078FNZ0_BRANA; BnaA09g29040D protein
STRINGBra024704.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]