PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00090212001

Common Name

GSBRNA2T00090212001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 197aa MW: 22638.4 Da PI: 6.9531

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00090212001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.3e-30	104	162	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+++gs+fpr+Y++C+ a+C vkkk+er++++p++v +tYeg+Hnh+ GSBRNA2T00090212001 104 LDDGFKWRKYGKKPIRGSPFPRHYHKCSNANCIVKKKIERDTSNPDYVLTTYEGRHNHP 162 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.0E-27	97	164	IPR003657	WRKY domain
PROSITE profile	PS50811	28.747	99	164	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-25	100	164	IPR003657	WRKY domain
SMART	SM00774	5.9E-31	104	163	IPR003657	WRKY domain
Pfam	PF03106	8.9E-22	105	162	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MNYPSNPNPN FIDFPITFTS DDYDDAFQMI MEQISLENHS PTLSWTSSEK LLAAEVTSPL 60 QTSLVTSPMS LEIEDKTEIK KRKRHKDDPI IHVFKTKSIE EIALDDGFKW RKYGKKPIRG 120 SPFPRHYHKC SNANCIVKKK IERDTSNPDY VLTTYEGRHN HPSPSVVYCD SDDFDLTSLN 180 ILSFQTRTYK YSHSAP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-21	104	165	17	78	Probable WRKY transcription factor 4
2lex_A	1e-21	104	165	17	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00090212001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430066	0.0	KF430066.1 Brassica rapa WRKY transcription factor 59 (WRKY59) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288993.1	1e-145	probable WRKY transcription factor 59
Swissprot	Q9SJ09	5e-92	WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBL	A0A078FSM5	1e-144	A0A078FSM5_BRANA; BnaA04g12540D protein
TrEMBL	M4ENA3	1e-144	M4ENA3_BRARP; Uncharacterized protein
TrEMBL	V5RF01	1e-144	V5RF01_BRACM; WRKY transcription factor 59
STRING	Bra030273.1-P	1e-144	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13835	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21900.1	2e-94	WRKY DNA-binding protein 59

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]