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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00090171001 | ||||||||
Common Name | GSBRNA2T00090171001, LOC106380671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 408aa MW: 46394.3 Da PI: 6.5703 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.4 | 7.2e-50 | 54 | 179 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ GSBRNA2T00090171001 54 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 142 79***************************.89***************888889************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + s++ + +glkktLvfy+g+apkg++++W+m+eyrl GSBRNA2T00090171001 143 IRSETYRPIGLKKTLVFYSGKAPKGTRSSWIMNEYRL 179 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-55 | 53 | 200 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.534 | 53 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-25 | 55 | 179 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MAIVPSTTSI ITMMSNQVNN NNEKGIEEDD HRGGHESRLQ NDDEADDHDQ DMVMPGFRFH 60 PTEEELIEFY LRRKVEGKRF NVELITFLDL YRYDPWELPA MAAIGEKEWY FYVPRDRKYR 120 NGDRPNRVTT SGYWKATGAD RMIRSETYRP IGLKKTLVFY SGKAPKGTRS SWIMNEYRLP 180 HHETEKYQKA ETSLCRVYKR PGVEDHPSLP RSTSTRHHNH NSSSSSRLAV RQQQQQHLPS 240 SSNHSDNNLN NNNLDKLSTE YSGDGSTITT TNSNSDVTIA LANQNIYRPM PFGASNTPII 300 SNQEDDETAI VDDLQRLVNY GQISGGGNIN HQYYQIAQQF HNQQLLNANA LQSVTAATTA 360 ALTPQTQATL AMNMIPAGTI PNNALWEMWN PLVPDGNKDH YTNIPFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-56 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-56 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-56 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-56 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-56 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-56 | 44 | 200 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-56 | 44 | 200 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00090171001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT000874 | 0.0 | BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675927.1 | 0.0 | NAC domain-containing protein 35 isoform X1 | ||||
Refseq | XP_013675928.1 | 0.0 | NAC domain-containing protein 35 isoform X2 | ||||
Swissprot | Q9ZVP8 | 0.0 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A078FN11 | 0.0 | A0A078FN11_BRANA; BnaC02g34540D protein | ||||
TrEMBL | A0A3P6DUV4 | 0.0 | A0A3P6DUV4_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g136280.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 0.0 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Entrez Gene | 106380671 |
Publications ? help Back to Top | |||
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