PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00089877001

Common Name

GSBRNA2T00089877001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 292aa MW: 33167.2 Da PI: 8.1566

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00089877001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.2	2e-33	77	217	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp+G++F+P+d+e++ +L++kv+++k ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ GSBRNA2T00089877001 77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVSt 162 799*********9.89*999956644322..22222333336******.566677888**************7333 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++++s + + g kk+Lv+y gr++k+ekt+Wvmh+y+l GSBRNA2T00089877001 163 deeghETRWHKTGKTRPIFS-QAGVDGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 217 45444788********.7889******6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-36	71	236	IPR003441	NAC domain
PROSITE profile	PS51005	32.524	77	236	IPR003441	NAC domain
Pfam	PF02365	9.1E-15	78	217	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSWCDDSDDN YDPNLERASN IDHPSIQLKN QSQSCVTSAP DSKIIVDAPI VMTCSSCGQK 60 IHQQDEQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLHPLID EFIPTLEGEN 120 GICYTHPEKL PGVSKDGQVR HFFHRPSKAY TTGTRKRRKV STDEEGHETR WHKTGKTRPI 180 FSQAGVDGFK KILVLYTNYG RQKKPEKTNW VMHQYHLGHS EDEKDGEPVL SKVFYQTQPR 240 QCGGSTEPKP KSRVNLNRFS YENHAGFGYE HEGKNEENTQ VIRKESFMKK I*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269\|PubMed:18952777}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00089877001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738267	0.0	KF738267.1 Brassica napus NAC transcription factor 10-1 (NAC10-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001302891.1	0.0	NAC domain-containing protein 10-like
Swissprot	F4HY61	0.0	NAC10_ARATH; NAC domain-containing protein 10
TrEMBL	A0A078FRB4	0.0	A0A078FRB4_BRANA; BnaA07g08370D protein
STRING	Bra030099.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28470.1	0.0	NAC domain containing protein 10

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]