![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00089537001 | ||||||||
Common Name | GSBRNA2T00089537001, LOC106386898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 180aa MW: 20023.7 Da PI: 9.3889 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 95.9 | 3.1e-30 | 3 | 58 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 + Y+eClkN+A+s Gg+a+DGCgEfmp++++ +++ +l C ACgCHRnFHRr+++ GSBRNA2T00089537001 3 FLYNECLKNQAVSFGGYALDGCGEFMPKSTTIlTDPPSLSCDACGCHRNFHRRDPS 58 68**************************99999********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-26 | 1 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.1E-25 | 4 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.5E-30 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.816 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 101 | 169 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.23E-15 | 103 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.2E-26 | 109 | 164 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MGFLYNECLK NQAVSFGGYA LDGCGEFMPK STTILTDPPS LSCDACGCHR NFHRRDPSNV 60 FSHRTNSPPP PPPLQPAAST QHSLLSLSSS GFSGPSDQDM GKISTDVDRK RKRTKFTVKQ 120 KVMMRAFAER AGWKINGCDD KYVREFCSEV GVEREVLKVW IHNNNGRNRN TTSSMFQKL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 8e-18 | 109 | 165 | 17 | 73 | ZF-HD homeobox family protein |
1wh7_A | 1e-17 | 110 | 164 | 18 | 72 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00089537001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013682173.1 | 1e-134 | zinc-finger homeodomain protein 12 | ||||
Swissprot | Q9FKJ9 | 6e-83 | ZHD12_ARATH; Zinc-finger homeodomain protein 12 | ||||
TrEMBL | A0A078JPX9 | 1e-132 | A0A078JPX9_BRANA; BnaAnng31040D protein | ||||
STRING | Bra006657.1-P | 1e-118 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60480.1 | 8e-68 | homeobox protein 26 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106386898 |
Publications ? help Back to Top | |||
---|---|---|---|
|