PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089276001
Common NameGSBRNA2T00089276001, LOC106447262
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 297aa    MW: 32320 Da    PI: 9.582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089276001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.8e-12556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         + +WT++E++ l+ +v+++G+g Wk I r          R+  ++k++w+++
  GSBRNA2T00089276001  5 KSKWTEDEEDALLAGVRKHGPGKWKNILRDPEfagvlSLRSNIDLKDKWRNL 56
                         679**********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.218161IPR017930Myb domain
SuperFamilySSF466895.24E-15261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-14357IPR009057Homeodomain-like
SMARTSM007173.0E-8459IPR001005SANT/Myb domain
PfamPF002491.5E-8556IPR001005SANT/Myb domain
CDDcd116603.20E-18756No hitNo description
SMARTSM005262.1E-14124188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-13125204IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.697126200IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.109.8E-9126191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.6E-10128198IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGKEKSKWTE DEEDALLAGV RKHGPGKWKN ILRDPEFAGV LSLRSNIDLK DKWRNLSVPA  60
DIQGSKDKVR TPKIKAAAFQ LAAVAAAATT PSPSSVSSPV APPLPRSGSS DLSIGDSCNM  120
LIDAKNAPRY DGMIFEALSA LKDANGSDVT TIFNFIEQKM YEVPEKRVLG SRLRRLAAQG  180
KLEKVSQLKS GTQNLYRMNN NSFLTMRTPV PAARPKEANA KPRNSQGLTV SQEKIALASG  240
TAAFKLYELD GKLEVLGGAV DDRARMTELA ERAEIMLLLA EELHERCCRG EIVELN*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089276001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583746.10.0PREDICTED: telomere repeat-binding factor 4 isoform X1
RefseqXP_013744608.10.0telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L11e-112TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A078IBP90.0A0A078IBP9_BRANA; BnaC05g13640D protein
TrEMBLA0A0D3CB230.0A0A0D3CB23_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ESL40.0A0A3P6ESL4_BRAOL; Uncharacterized protein
STRINGBo5g023860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-111MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]