PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088584001
Common NameGSBRNA2T00088584001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 349aa    MW: 39032.7 Da    PI: 8.0201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088584001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13280325655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  GSBRNA2T00088584001 280 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 325
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-16277338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-11278327No hitNo description
Gene3DG3DSA:4.10.280.105.0E-14279336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-10280325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDSNHLYDPN HIPSSGSGLL RFRSAPSSVL AAFVADDNKS GLDSDRLISR FARSNGPSEF  60
EAKSPVTSVS YAATLPPPQQ QPEPSSFLGL PPHYPRQSKR MMNTIGLDQF LNDHHTKPVE  120
SNLLRQSSSP AEMFTNTTAQ NGYGSVRSLM NYEEDEQSPS SSSELRRHNS LSSRPPSSLG  180
MLSQIPEIAS EISFQYSHWN DPASFIDNLS SLKRETEDDG KLFQNGESGN RMQLLSHHLS  240
LPNASSTASD MVTVDKFMQL QDSVPCRIRA KRGCATHPRS IAERVRRTKI SERMRKLQEL  300
VPNMDKQTNT ADMLDLAVDY IKDLQRQYKI LNENRANCKC MNKEKNLI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088584001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142051.10.0PREDICTED: transcription factor bHLH130
RefseqXP_013744984.10.0transcription factor bHLH130-like
RefseqXP_022574158.10.0transcription factor bHLH130-like
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A078IDH80.0A0A078IDH8_BRANA; BnaA04g24390D protein
STRINGBra016886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]