PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088556001
Common NameGSBRNA2T00088556001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 556aa    MW: 60201.8 Da    PI: 7.6884
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088556001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14200259155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  GSBRNA2T00088556001 200 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 259
                          57*******************666664477446**********99*************98 PP
2AP246.31.1e-14304353355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSBRNA2T00088556001 304 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 353
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-11200259IPR001471AP2/ERF domain
CDDcd000189.18E-22200269No hitNo description
SuperFamilySSF541715.62E-17200269IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-15201268IPR001471AP2/ERF domain
SMARTSM003804.6E-28201273IPR001471AP2/ERF domain
PROSITE profilePS5103218.927201267IPR001471AP2/ERF domain
PRINTSPR003673.0E-6202213IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18302363IPR016177DNA-binding domain
CDDcd000189.05E-25302363No hitNo description
PROSITE profilePS5103219.203303361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18303361IPR001471AP2/ERF domain
SMARTSM003803.7E-33303367IPR001471AP2/ERF domain
PfamPF008471.5E-9304353IPR001471AP2/ERF domain
PRINTSPR003673.0E-6343363IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MKNNNNKSSS SYDSSLSPSS SSTSHQNWLS FSLSNNNNFN SSSNPNLATS TSDHHHHPHP  60
SHVSLFQAFS TTPVHRHDES PGTSSGDATA ALSMYPGGPK LENFLGGGAT TTTTGQMQQG  120
QSLGGVVFSS NVEQARHPPS AAEIYDYELK SIAASFLGNY SGGHSSEVSS GQKQQHNPPT  180
ATEASPTPKK NVESFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY  240
DKEDKAARAY DLAALKYWGP TTTTNFPISN YEPELEEMKH MTRQEFVASL RRKSSGFSRG  300
ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF  360
DISRYDVKSI ASCNLPVGGL NPKPSPITPA PDKQVDISPS DPPSLTTPSL TFNVATPVHD  420
HEGAFFHTGI PIKQDPAAHY WSNVFGFPPN LKTETRPIAT FGSDLHSTSP GFTVMPVMQD  480
GGNNFGGGFV ESEGYNNNHS AASSPVSAIP LPSTVDNSNE GYGGNINWIS NNTSNSYQTA  540
KSNLSVLQTP VFGLE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.180020.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088556001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5198210.0AB519821.1 Brassica napus BnEMK mRNA for AP2 domain transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126838.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ30.0AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A078IFJ30.0A0A078IFJ3_BRANA; BnaA02g08130D protein
STRINGBra020444.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.10.0AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]