PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087759001
Common NameGSBRNA2T00087759001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 279aa    MW: 31567.4 Da    PI: 8.422
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087759001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.51.4e-3321123199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kv tpsdv+k++rlv+pk++ae++    +++++++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d 
  GSBRNA2T00087759001  21 FEKVVTPSDVGKLNRLVIPKQHAERYfpldNSDNNKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDP 110
                          99****************************66677889*************************************************996 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                           ++++l++ ++r+
  GSBRNA2T00087759001 111 GNKEKLFIDWRRR 123
                          688889****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4411128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3218126IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-2719112No hitNo description
PROSITE profilePS5086314.73421124IPR003340B3 DNA binding domain
PfamPF023626.4E-3121123IPR003340B3 DNA binding domain
SMARTSM010198.8E-2521124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNLEEEKPVE KASSMEREHM FEKVVTPSDV GKLNRLVIPK QHAERYFPLD NSDNNKGLLL  60
NFEDRTGNSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFQRDP GNKEKLFIDW  120
RRRPKIPDHP HQFAGAMFPR FYSFSHPQNL YHRYQQDLGI GYYVRSMERN DSTAVIESVP  180
VIMQRRAAHV AAIPSSRGEK RLRLFGVDME CGGGGSVNST EEESSSSGGG GGVSMASVGS  240
LLQLRLVSSD DESLVAMEAA SVDEDHHLFT KKGNFRFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-66161263116B3 domain-containing transcription factor NGA1
5os9_B9e-66161263116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087759001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728771e-155AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662332.10.0B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2681e-150NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A078JVB10.0A0A078JVB1_BRANA; BnaCnng63450D protein
TrEMBLA0A3P6GRB20.0A0A3P6GRB2_BRAOL; Uncharacterized protein
STRINGBo6g079210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-141B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]