PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087618001
Common NameGSBRNA2T00087618001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 284aa    MW: 31069.7 Da    PI: 4.7433
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087618001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.15.5e-26155211258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          dDg++WrKYGqK+v+g+ +prs YrCt++gC+vkk ve+s ++ k+v+ tY   H+h
  GSBRNA2T00087618001 155 DDGFRWRKYGQKVVTGNANPRSDYRCTYTGCEVKKLVEKSVDNVKLVVATYDRIHEH 211
                          8*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-25140213IPR003657WRKY domain
PROSITE profilePS5081125.775149214IPR003657WRKY domain
SuperFamilySSF1182909.29E-22151214IPR003657WRKY domain
SMARTSM007741.6E-26154213IPR003657WRKY domain
PfamPF031062.2E-19155211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAAKLGFDIP PLELGRIIPP CPLPNDAPPE TVESSDDIPT ENSVYITSHE SNADPIDAPL  60
APKTLSTALV VAEADVMNPI SLESGSKDND KEREYNQEED KVEDHNVVVE PPTRKRKSQV  120
NTEENMVSNI IGVTRPKNKT QSVIIQVESV EDYPDDGFRW RKYGQKVVTG NANPRSDYRC  180
TYTGCEVKKL VEKSVDNVKL VVATYDRIHE HVPPPECISK SSTKNQSGSS MSQDPRMQTL  240
GLAAKLPANR NHGVMNRNDE PKIDLVIPDG AEGIQGDKGA TIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-18143215375WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117TRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087618001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624968.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A078IEI60.0A0A078IEI6_BRANA; BnaC03g69190D protein
STRINGBo3g180960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.19e-37WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]