PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087585001
Common NameGSBRNA2T00087585001, LOC106354497, LOC106414246
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 290aa    MW: 32998.4 Da    PI: 6.1054
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087585001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.33.4e-102212581954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          F+   ++yps +e+  LA+++gL+++qV++WF N R +
  GSBRNA2T00087585001 221 FHHflHPYPSDAEKLMLASQTGLSKNQVSNWFINARVR 258
                          554459******************************98 PP
2BELL102.82.4e-3381152172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e++el++k++kLlsll++Vd+r+  y++ql++vissFe+vag gs+k+Yt lAl+a++rhF +L++ai +q+
  GSBRNA2T00087585001  81 ENHELHIKITKLLSLLQQVDERFDIYCNQLEQVISSFEEVAGEGSSKLYTGLALQAMTRHFGSLQEAILSQL 152
                          689******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-1511150IPR006563POX domain
PfamPF075267.0E-3019148IPR006563POX domain
SMARTSM003892.3E-10202266IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27207268IPR009057Homeodomain-like
CDDcd000867.95E-12208263No hitNo description
SuperFamilySSF466893.89E-18208271IPR009057Homeodomain-like
PfamPF059205.2E-18219258IPR008422Homeobox KN domain
PROSITE profilePS5007111.936221262IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEEFRVRHEF SSTTSVSLDS RYVKAARCLL EEVIDMGGRE VDLCNDVLIQ QLFPGRRRPG  60
FGLSSEIKSE LCNSGFMSLP ENHELHIKIT KLLSLLQQVD ERFDIYCNQL EQVISSFEEV  120
AGEGSSKLYT GLALQAMTRH FGSLQEAILS QLNSLRRRFI ISQDFVPKIV TSGLSQLSLF  180
DGNTPSSLQR LGWVQGPQRH AWKPIRGLPE TSVAILRAWL FHHFLHPYPS DAEKLMLASQ  240
TGLSKNQVSN WFINARVRLW KPMIEEMYRE EFGDSSDESM QREGNDDSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-17208269566Homeobox protein Meis2
3k2a_B3e-17208269566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087585001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649901.10.0BEL1-like homeodomain protein 11
RefseqXP_013710380.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD10.0BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A078IEG80.0A0A078IEG8_BRANA; BnaAnng09210D protein
TrEMBLA0A397YRV60.0A0A397YRV6_BRACM; Uncharacterized protein
STRINGBo6g119610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.10.0BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]