PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087561001
Common NameGSBRNA2T00087561001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 437aa    MW: 47648.1 Da    PI: 9.637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087561001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05205227223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           C+ Cg++F+  ++L+ H+ + H
  GSBRNA2T00087561001 205 ACSQCGEVFPKLESLELHQAVrH 227
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808204232IPR007087Zinc finger, C2H2
PROSITE patternPS000280204227IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-22229432No hitNo description
Gene3DG3DSA:3.90.228.101.3E-10231432IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MALLTILPEN AEPPKHTPPP SKRKKRENPT EQPHKPQKPH KPQKQKAAAP QKQPSSWDQI  60
KNLLTCKQIE GSRVHDPSKN SQPAPSTTAN LSPSKLSSSC SSICSFRDVA HGNTRVVHRA  120
DNSPDVAKSA TPDSETRLLT RKPGQHGSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR  180
KLSGCYECHM IVDPSRYPIS PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN  240
IVEIIFKSSW LKKDSPMCKI ERILKVHNTQ RTIQRFEDCR DAVKARALQT ARKDARCAAD  300
GNELLRFHCT TLTCSLGSRG SSSLCSNLPS CGVCNVIRHG FQGNGGVRTT ASSGRADDLL  360
RCSDDARRVM LVCRVIAGRV KRVDLPADST VEEKNGGVFD SGAVNAGVYS NLEELVVYNP  420
RAILPCFVVI YKVLES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.135730.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087561001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592738.10.0PREDICTED: uncharacterized protein LOC106300986
RefseqXP_013702476.10.0uncharacterized protein LOC106406379
TrEMBLA0A078IEB00.0A0A078IEB0_BRANA; BnaAnng09010D protein
STRINGBo6g119810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]