PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00087503001 | ||||||||
Common Name | GSBRNA2T00087503001, LOC106390538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25443.9 Da PI: 9.1368 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.5e-12 | 73 | 120 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RRdr+N++f eL +l + + +K +Ka+iL Av+ + +L GSBRNA2T00087503001 73 SKACREKQRRDRLNDKFTELSVILEPG---NPPKTDKAAILVDAVRMVTQL 120 5678**********************8...78**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.41E-9 | 67 | 125 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-13 | 68 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.294 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-13 | 72 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 73 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-9 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVSPENANWI SELIDADYGS FTIQGPGFSW PVHQQPIGVS SVGVDGSAGN SEATKEPVSK 60 KRARCDSSSA TSSKACREKQ RRDRLNDKFT ELSVILEPGN PPKTDKAAIL VDAVRMVTQL 120 RGEAQKLKDS NSSLQGKINE LKTEKNELRD EKQRLKTEKE KLEQQLKAMN APPQPSFFPG 180 PPMMPTAFAS AQGQAPGNKM VPVISYPGVA MWQFMPPASV DTSQDHVLRP PVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.1902 | 0.0 | flower| leaf| microspore| microspore-derived embryo| root| seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00087503001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352726 | 0.0 | AK352726.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013686484.1 | 1e-172 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-155 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A078IC90 | 1e-171 | A0A078IC90_BRANA; BnaC09g31010D protein | ||||
STRING | Bra002964.1-P | 1e-163 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-122 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106390538 |