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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00087293001 | ||||||||
Common Name | GSBRNA2T00087293001, GSBRNA2T00126249001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 29033.8 Da PI: 5.711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.5 | 4.2e-17 | 74 | 126 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs f+ Lr++lP+ + +skKls ++++ + +YI +Lq GSBRNA2T00087293001 74 KKLNHNASERDRRKKINSLFASLRSCLPTsD---QSKKLSISATVSRSLKYIPELQ 126 6789*************************66...*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.45E-15 | 72 | 130 | No hit | No description |
PROSITE profile | PS50888 | 15.034 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-17 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-14 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-16 | 74 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-13 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCALVPPLFP DFGWPSTAGY ERSYYLGGEN LNNDMFLDFP VLETYGVLAH HQNSLGVSVS 60 SEGNGIDNNP VVKKKLNHNA SERDRRKKIN SLFASLRSCL PTSDQSKKLS ISATVSRSLK 120 YIPELQEQVK KLLQKKEELL VRVSGQRDIE LYVKPQPKTV ASYVSTVSAT RLGDNEVMVQ 180 ISSSKINNFS ISNVLTGLEE DDFVLVDVSS SRSQGERLFY TLHLQVENMD DHYKMNCEEL 240 SERMLYLYEE CENSFR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 87 | KKKLNHNASERDRRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00087293001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139058.1 | 0.0 | PREDICTED: transcription factor ORG2-like | ||||
Refseq | XP_022573640.1 | 0.0 | transcription factor ORG2-like | ||||
Swissprot | Q9M1K1 | 1e-148 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | A0A078CGT8 | 0.0 | A0A078CGT8_BRANA; BnaC04g24710D protein | ||||
TrEMBL | A0A3P6CC88 | 0.0 | A0A3P6CC88_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DDU0 | 0.0 | M4DDU0_BRARP; Uncharacterized protein | ||||
STRING | Bra014659.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-127 | bHLH family protein |