PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086985001
Common NameGSBRNA2T00086985001, LOC106427656
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 268aa    MW: 30349.2 Da    PI: 6.8446
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086985001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.51.1e-3249155199
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k ltpsdv+k++rlv+pk++ae++        ++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+  D+v F
  GSBRNA2T00086985001  49 FEKSLTPSDVGKLNRLVIPKQHAEKYfplntiisNNAEEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFF 138
                          99*******************************9888899************************************************** PP

                          EE-SSSEE..EEEEE-S CS
                   B3  83 kldgrsefelvvkvfrk 99 
                          +++++++++l+++++r+
  GSBRNA2T00086985001 139 QRQRSDSRRLFIGWRRR 155
                          *99889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-3943163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2944155IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-2648146No hitNo description
SMARTSM010191.3E-2249156IPR003340B3 DNA binding domain
PROSITE profilePS5086313.53549156IPR003340B3 DNA binding domain
PfamPF023626.4E-3049155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK  60
LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK CWRFRYSYWN SSQSYVLTKG  120
WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY  180
SNRPAHSEYS HYGAAVATAT ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA  240
AAAECPRQDS YYDQNMYNYY TPHSSAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-50451554113B3 domain-containing transcription factor NGA1
5os9_B3e-50451554113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086985001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067002e-77AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026882e-77CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130927.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_009130928.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_009130929.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_013723834.10.0B3 domain-containing protein At5g06250
RefseqXP_013723840.10.0B3 domain-containing protein At5g06250
SwissprotQ9FNI31e-122Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A078I8L80.0A0A078I8L8_BRANA; BnaA02g29460D protein
TrEMBLM4CNU80.0M4CNU8_BRARP; Uncharacterized protein
STRINGBra005886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-114B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]