PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085997001
Common NameGSBRNA2T00085997001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 526aa    MW: 58481.1 Da    PI: 7.4356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085997001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.4e-32186243260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+k++ei+Y+g+H+h+k
  GSBRNA2T00085997001 186 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGKMTEIIYKGTHDHPK 243
                          8****************************************.***************85 PP
2WRKY106.71.2e-33349407159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSBRNA2T00085997001 349 LDDGYKWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 407
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.157180244IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-27182244IPR003657WRKY domain
SuperFamilySSF1182904.84E-25183244IPR003657WRKY domain
SMARTSM007741.6E-34185243IPR003657WRKY domain
PfamPF031061.6E-24186242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37334409IPR003657WRKY domain
SuperFamilySSF1182901.96E-29341409IPR003657WRKY domain
PROSITE profilePS5081138.4344409IPR003657WRKY domain
SMARTSM007748.8E-39349408IPR003657WRKY domain
PfamPF031066.7E-26350407IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MNPQADNERK ESQDSTARHN SAVGGGGARY RLMSPAKLPI SRCNDISRLS PTSFLESPVF  60
ISNIKPEPSP TTGSLFKPRP VHVNSSSYTG RTLHQNTFTE HKSTEFEFRP PASNMVYAEH  120
RSEPPVQDHG SSHSPSSISE TAASSTDLSR PTPPPLQTPP TGSDQDESVQ TSQNDSRGST  180
PSVLADDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK LFERSHDGKM TEIIYKGTHD  240
HPKPQPGRRN SAAQEESVSS NDYSRDGKTI YNKGVYNLSQ AIEQTGNNNP EVPPTTEDGG  300
EVKDDLEEEE DPFTKRRRLE GSMEITTPLV KPIREPRVVV QTLSEVDILD DGYKWRKYGQ  360
KVVRGNPNPR SYYKCTAPGC PVRKHVERAS HDPKAVITTY EGKHNHDVPT SKSTNHHVIQ  420
PRFRPDETTD TISLNLGVGI SSDGPDNTSN ERNQQLLINQ THPNGVGFRF VHAAPMSYYH  480
ASLNSGIHQY GSRETQNETQ NGDVSSLNHS SYQYPHNIGR IQSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37184409877Probable WRKY transcription factor 4
2lex_A2e-37184409877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314318KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.71580.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085997001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931550.0KM593155.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY81) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013738113.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A078I9A60.0A0A078I9A6_BRANA; BnaA03g48160D protein
STRINGBra019095.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]