PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085731001
Common NameGSBRNA2T00085731001, LOC106395838
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 442aa    MW: 49960.5 Da    PI: 4.8091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085731001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-11233276654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  GSBRNA2T00085731001 233 FTTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINEL 276
                          578*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.18E-11225281No hitNo description
Gene3DG3DSA:4.10.280.101.7E-11225284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-13227295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.056227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8231276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-9233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MYEDSSCFDP NPTVEATVDN NGGYYDSTTA TETDFTVSQQ FQPPVMISGS TINTFSDELK  60
LPTMDEFSVF PPVVSFPNSD SQNQISNDNN NHLIRQMIHD SNWAASVDNY GFFMNTSDQN  120
TTTTPTPDLL SLLHLPKCSV PLPSSNLSDI MPGSCISYDP LFHLNLPPQP PLILTADDYS  180
GFFLGTDTNT TNTQRDQHNV GDENNNDQFD SGIIEFSKNI RRKRRGKQKN KPFTTERERR  240
CHLNERYEAL KLLIPNPSKG DRASILQDGI DYINELRRRV SELKFLVERK RCGGRHQNNN  300
EVENNNNLDD LNIVDDDDEN MEKKTESDVI DQCSSNNTLR CSWLQRKSKL TEVDVRIVDD  360
EVTIKVVQKR KINCLLVVTK VIDHLHLDLH HVSGGQIGEH YSFLLNTKIN EGSTIYASAI  420
ANKVIEVVDQ HNMAALPINN Y*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085731001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634977.10.0PREDICTED: transcription factor bHLH91-like
RefseqXP_022558009.10.0transcription factor bHLH91
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A078FLV90.0A0A078FLV9_BRANA; BnaC04g42030D protein
TrEMBLA0A0D3C3D40.0A0A0D3C3D4_BRAOL; Uncharacterized protein
STRINGBo4g176060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]