PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085420001

Common Name

GSBRNA2T00085420001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 400aa MW: 45487.1 Da PI: 5.9792

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085420001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.4	2.6e-27	15	137	13	127
NAM 13 elvveyLkkkvegkklel.eevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 + + +yL ++ ++++ e++++vdiy+++Pw+Lp k +++++++ wyfF +++ ++++g+r++r tksg+Wk+tg + ++++k + GSBRNA2T00085420001 15 Q-IIKYLFITNSDLTVQFiYEFMSTVDIYEFDPWELPcKcsRINSTDEVWYFFGCKKDQHNRGERQSRRTKSGFWKKTGPTMDIMRKrgN 103 4.44777777777776552466************964667778899**********************************9877 PP NAM 97 gelvglkktLvfy...kgrapkgektdWvmheyr 127 +e++g k+++vf p+ k+dWvmhey GSBRNA2T00085420001 104 REKIGEKRVFVFQyskILGGPSKPKSDWVMHEYV 137 888*****854322567778*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.011	3	164	IPR003441	NAC domain
SuperFamily	SSF101941	1.24E-29	23	164	IPR003441	NAC domain
Pfam	PF02365	1.1E-11	38	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MYCLIESKLL YFNEQIIKYL FITNSDLTVQ FIYEFMSTVD IYEFDPWELP CKCSRINSTD 60 EVWYFFGCKK DQHNRGERQS RRTKSGFWKK TGPTMDIMRK RGNREKIGEK RVFVFQYSKI 120 LGGPSKPKSD WVMHEYVATF SSPDSHNQTM MMMMKYTVCK VMFKGDERVL SSSSSSSSFA 180 GQIQHHHLSL IPHVNSNNSG GLSTETEVDP RQFTGFPHLE EETQFEDEML RVFNNLPTDD 240 WNSLFSNDEE QGNAIFMQED RNDYRPKMSL TGVFIDHSDD DSDSDSKSST TTTTGSIKTS 300 STCVTFGFSN HLIDLPESPS SSTIESGSVT QEVSNALGAN SAISEKKMSP CDDDAQVSEI 360 GGDQMGQEMV IKHKRAGFIY RMIQKFAKKI KLCSCVSRI*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MYCLIESKLL YFNEQIIKYL FITNSDLTVQ FIYEFMSTVD IYEFDPWELP CKCSRINSTD  60
EVWYFFGCKK DQHNRGERQS RRTKSGFWKK TGPTMDIMRK RGNREKIGEK RVFVFQYSKI  120
LGGPSKPKSD WVMHEYVATF SSPDSHNQTM MMMMKYTVCK VMFKGDERVL SSSSSSSSFA  180
GQIQHHHLSL IPHVNSNNSG GLSTETEVDP RQFTGFPHLE EETQFEDEML RVFNNLPTDD  240
WNSLFSNDEE QGNAIFMQED RNDYRPKMSL TGVFIDHSDD DSDSDSKSST TTTTGSIKTS  300
STCVTFGFSN HLIDLPESPS SSTIESGSVT QEVSNALGAN SAISEKKMSP CDDDAQVSEI  360
GGDQMGQEMV IKHKRAGFIY RMIQKFAKKI KLCSCVSRI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-14	20	136	23	140	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-14	20	136	23	140	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-14	20	136	23	140	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-14	20	136	23	140	NO APICAL MERISTEM PROTEIN
4dul_A	1e-14	20	136	23	140	NAC domain-containing protein 19
4dul_B	1e-14	20	136	23	140	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085420001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119784.1	0.0	PREDICTED: NAC domain-containing protein 5-like
Refseq	XP_022548699.1	0.0	NAC domain-containing protein 5-like
Swissprot	O81914	2e-99	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A078FLA6	0.0	A0A078FLA6_BRANA; BnaC05g01040D protein
TrEMBL	A0A3P6ENE4	0.0	A0A3P6ENE4_BRAOL; Uncharacterized protein
STRING	Bra033308.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-85	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]