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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00085416001 | ||||||||
Common Name | GSBRNA2T00085416001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 213aa MW: 24412.5 Da PI: 9.3014 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.1 | 4.2e-37 | 5 | 130 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkk.vegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +GfrF Ptd+e+v++y++ k ++g++ ++++++i vdi++++Pw+Lp k + +++++ wyfF+++d+ +g+r++r+tksg+Wk+tg GSBRNA2T00085416001 5 VGFRFIPTDQEIVDYYIRLKnISGSDtNHVDKAIGAVDICSFDPWELPsKsRRESRDQIWYFFCRKDN---RGERQSRKTKSGFWKKTGP 91 7***************99773555555667777***************433445577799*****988...589**************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 + ++++k ++e++g k++Lvf++ + + +k+ Wvmhey GSBRNA2T00085416001 92 TMDIFQKrgDREKIGEKRVLVFHS--SGSKSKSAWVMHEYV 130 ******9887889**********4..444469********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.348 | 3 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-37 | 4 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-23 | 5 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MENRVGFRFI PTDQEIVDYY IRLKNISGSD TNHVDKAIGA VDICSFDPWE LPSKSRRESR 60 DQIWYFFCRK DNRGERQSRK TKSGFWKKTG PTMDIFQKRG DREKIGEKRV LVFHSSGSKS 120 KSAWVMHEYV ATFLPPTDHM TYTLCKLKFK GDASDLPSSS GADGGGDVDE HNQFLITHNS 180 GGYEVSKSSL DASKENMMMY KGLRWENTIK WI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-18 | 6 | 129 | 20 | 140 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-18 | 6 | 129 | 20 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-18 | 6 | 129 | 20 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-18 | 6 | 129 | 20 | 140 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-18 | 6 | 129 | 23 | 143 | NAC domain-containing protein 19 |
3swm_B | 6e-18 | 6 | 129 | 23 | 143 | NAC domain-containing protein 19 |
3swm_C | 6e-18 | 6 | 129 | 23 | 143 | NAC domain-containing protein 19 |
3swm_D | 6e-18 | 6 | 129 | 23 | 143 | NAC domain-containing protein 19 |
3swp_A | 6e-18 | 6 | 129 | 23 | 143 | NAC domain-containing protein 19 |
3swp_B | 6e-18 | 6 | 129 | 23 | 143 | NAC domain-containing protein 19 |
3swp_C | 6e-18 | 6 | 129 | 23 | 143 | NAC domain-containing protein 19 |
3swp_D | 6e-18 | 6 | 129 | 23 | 143 | NAC domain-containing protein 19 |
4dul_A | 6e-18 | 6 | 129 | 20 | 140 | NAC domain-containing protein 19 |
4dul_B | 6e-18 | 6 | 129 | 20 | 140 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00085416001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638581.1 | 1e-120 | PREDICTED: NAC domain-containing protein 5-like isoform X3 | ||||
Refseq | XP_013638582.1 | 1e-120 | PREDICTED: NAC domain-containing protein 5-like isoform X4 | ||||
Swissprot | O81914 | 2e-69 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | A0A078FSE9 | 1e-158 | A0A078FSE9_BRANA; BnaC05g01020D protein | ||||
STRING | Bo5g002930.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 4e-68 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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