PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085409001
Common NameGSBRNA2T00085409001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 350aa    MW: 39860.7 Da    PI: 7.8589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085409001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.97.5e-2751366127
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                           F+P ++el+++yL++k+++++ ++ + i+ev+i+++eP dLp  +k  + + wyf s+ + k  + +r++ra k+g Wk tg++ ++++
  GSBRNA2T00085409001   5 TFNPPEDELINYYLNNKITENDDPEGKQINEVNICHHEPADLPGLAKIeSGHTWYFISPVK-KFGKLNRRKRASKTGHWKITGNSCTIKD 93 
                          7*********************999899***************543441345777777765.567789999******************* PP

                  NAM  95 kkgelvglkktLvfykgrapkge..........ktdWvmheyr 127
                          ++g+ +glkk Lvf ++++++++          k +W++he++
  GSBRNA2T00085409001  94 TDGNPIGLKKFLVFQENKNRRSStllpttahqhKFTWIIHEFH 136
                          ***************65444443344444444499*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.4791155IPR003441NAC domain
PfamPF023652.5E-163136IPR003441NAC domain
SuperFamilySSF1019414.58E-324155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNKYTFNPPE DELINYYLNN KITENDDPEG KQINEVNICH HEPADLPGLA KIESGHTWYF  60
ISPVKKFGKL NRRKRASKTG HWKITGNSCT IKDTDGNPIG LKKFLVFQEN KNRRSSTLLP  120
TTAHQHKFTW IIHEFHSFLH HPNKDAFVLC KLKKKTRSRS GVAVDASPAV TDLSPTIISD  180
PILNDSLMLT HHKDPVEDYG GDYCNDLEEL TPELDSSRWL DHSYQFDSNH WGSFADTTHA  240
ESPIRETLET KRGAAASSHD ITPFKPPPVN QPSIHRNTPV LISFTPSSPQ TPSTHVFPLS  300
ESINRHFEIS SASLHHREES FSRNITLYHR RASIVLRREL IHRIQPETS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085409001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511051.11e-179PREDICTED: NAC domain-containing protein 62 isoform X2
TrEMBLA0A078FQS70.0A0A078FQS7_BRANA; BnaC05g00960D protein
STRINGBo5g002870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.13e-78NAC domain containing protein 49
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]