PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085375001
Common NameGSBRNA2T00085375001, LOC106399307
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 189aa    MW: 20415 Da    PI: 5.3159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085375001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-184090155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+++l+g
  GSBRNA2T00085375001 40 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAALCLKG 90
                         68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-124090IPR001471AP2/ERF domain
PROSITE profilePS5103222.9854198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-304199IPR001471AP2/ERF domain
SMARTSM003803.7E-3341104IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2141100IPR016177DNA-binding domain
PRINTSPR003675.6E-124253IPR001471AP2/ERF domain
CDDcd000186.22E-304299No hitNo description
PRINTSPR003675.6E-1280100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKLSPPQPPA LNNNDPTAAA SAVKSCGGGG GETFSTTRHP VYHGVRKRRW GKWVSEIREP  60
RKKSRIWLGS FPVPEMAAKA YDVAALCLKG RKAQLNFPDE IDDLPRPSTC TARDIQVAAA  120
KAANAVKITK TGDDVADIDD GDDFWSGIEL PELIMTGGGW SPELFVSGED ATWVVDGDSY  180
QYQFMACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-16391021276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085375001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531060.0AK353106.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584306.11e-138PREDICTED: ethylene-responsive transcription factor ERF023
RefseqXP_013695236.11e-138ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-105ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A078FQP01e-137A0A078FQP0_BRANA; BnaC05g00680D protein
TrEMBLA0A0D3C6Z11e-137A0A0D3C6Z1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FDY41e-137A0A3P6FDY4_BRAOL; Uncharacterized protein
STRINGBo5g002600.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-96ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]