 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSBRNA2T00084708001 |
| Common Name | GSBRNA2T00084708001, LOC106391725 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
VOZ |
| Protein Properties |
Length: 487aa MW: 54548.8 Da PI: 5.2608 |
| Description |
VOZ family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00084708001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | VOZ | 415.1 | 1.3e-127 | 223 | 437 | 1 | 215 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90
pppsaflgpkcalwdctrpa+gs+w+ dycs +h +lalne++pg +pvlrp+gi+lkd+ll++al+ak+ gk+vgipecega+++k+pw
GSBRNA2T00084708001 223 PPPSAFLGPKCALWDCTRPAHGSDWYLDYCSDYHGNLALNEDSPGAAPVLRPGGISLKDNLLIDALRAKTLGKNVGIPECEGAVNTKCPW 312
89**************************************************************************************** PP
VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180
naaelf+l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp++ fewhl+ey+ine+d +
GSBRNA2T00084708001 313 NAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGLFEWHLFEYQINESDVC 402
****************************************************************************************** PP
VOZ 181 alyrlelklvdekksakgkvskdsladlqkklgrl 215
alyrlelk++++kks+kg+v+kd+ladlqkk+ ++
GSBRNA2T00084708001 403 ALYRLELKVTNGKKSPKGRVAKDPLADLQKKMEKM 437
********************************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 487 aa
Download sequence Send
to blast |
MSNHEKITCV SSSHQNLVEK LMQLQERFSH LQAARKEGRV GDHAVLEAQI SQNLREWQAE 60
LTAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSSLK EHAAPKPDGF DQSLCPPPEH 120
LEWIDEEPFC QSPFHVNFSS GFEEAVNNTQ PHDQQLHFAF QEFDPSINTA PDFHVQSNLD 180
IASQLDYHLS EVRQEFNNSP SIKLDASENY TDFTTPQSVR VPPPPSAFLG PKCALWDCTR 240
PAHGSDWYLD YCSDYHGNLA LNEDSPGAAP VLRPGGISLK DNLLIDALRA KTLGKNVGIP 300
ECEGAVNTKC PWNAAELFHL ELVEGETIRE WLFFDKPRRA YDSGNRKQRS LPDYSGRGWH 360
ESRKQLMKEQ EGQKRSYYMD PQPPGLFEWH LFEYQINESD VCALYRLELK VTNGKKSPKG 420
RVAKDPLADL QKKMEKMGHL TPEVASDKPS PPTKGRTKST KGVKVATQDT PVPATVANEP 480
EPSSHQ*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles and mesophyll cells of various tissues. Expressed in the root, especially in the root tip. Also detected in stamen filaments, stipules and anthers. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
| Publications
? help Back to Top |
- Chalhoub B, et al.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Science, 2014. 345(6199): p. 950-3
[PMID:25146293] - Yasui Y,Kohchi T
VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
[PMID:25351333] - Koguchi M,Yamasaki K,Hirano T,Sato MH
Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis.
Plant Signal Behav, 2017. 12(3): p. e1295907
[PMID:28277968] - Kumar S,Choudhary P,Gupta M,Nath U
VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
Plant Physiol., 2018. 176(4): p. 2917-2930
[PMID:29507119]
|
