PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084696001
Common NameGSBRNA2T00084696001, LOC106391731
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 346aa    MW: 38397.8 Da    PI: 6.8565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084696001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12277322655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + a +L +Av+YIk+Lq
  GSBRNA2T00084696001 277 SIAERVRRTKISERMRKLQELVPNM----DKQTNTAGMLDLAVDYIKDLQ 322
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15274335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-11275324No hitNo description
Gene3DG3DSA:4.10.280.104.3E-14276333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDSNHLYDPN HTPSTGSGLL RFRSAPSSVL ATFVADDDDE SGLDSDRLLS RFASSNGPSE  60
FEAKSSVTSV SYAATLPPPP QLPEPSGFLG LPPHYPRQSK GMMNTIGLDQ FLNDHHAKPV  120
ESNLLRQSSS PAGMFTNLTA QNGYGSVRSL MNYEEDEQSP SSSNELRRHN SLSSRPPSSL  180
GMLSQIPEIA SESSFQYNHW NDPASFIDNL SSLKRETEDD GKLFQNGESG NRMHHLSLPN  240
ASSTTSDMVS VDKYMQLQDS VPCRIRAKRG CATHPRSIAE RVRRTKISER MRKLQELVPN  300
MDKQTNTAGM LDLAVDYIKD LQRQYKILNE NRANCKCMNK EKNLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084696001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687887.10.0transcription factor bHLH130
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A078FPM00.0A0A078FPM0_BRANA; BnaC04g48190D protein
STRINGBo4g191390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-179bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]