PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00084244001 | ||||||||
Common Name | GSBRNA2T00084244001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 391aa MW: 43232.7 Da PI: 8.4736 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 9.2e-18 | 53 | 113 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ GSBRNA2T00084244001 53 KPRWNPKPEQIRILEAIFNSgLVNPPREEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 113 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 110.9 | 7.1e-36 | 52 | 114 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sGl++P++eei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k GSBRNA2T00084244001 52 PKPRWNPKPEQIRILEAIFNSGLVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-7 | 43 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.544 | 49 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-12 | 50 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.0E-8 | 51 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.68E-8 | 52 | 114 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 53 | 113 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPHQHQ WQHDMNSPLL PSPASHRSSP FTGCEVERSP EPKPRWNPKP 60 EQIRILEAIF NSGLVNPPRE EIRRIRAQLQ EYGQVGDANV FYWFQNRKSR SKHKLRLLHN 120 HSKHSLPPPQ PQPQPQPLSS ASSSSSSSSS SSKSTKLPKT KNKKNNNNTN LSLGGGSQMM 180 GVFPPEASFL FPASTDGGFE GIPVSSQLGF FPGDMVEQPK PAPPTVGPCT GILLSEIMNS 240 SVGYGIHNHQ QLSEKEDEEM RMKMLQQPQI CYAATSDQIS SYNNNNNNIM LHVPPTASTT 300 TTSNPLAIVP STLDQLQVQA GARIRVFINE MEFEVSPGQF NVRDAFGEEV VLINSAGQPI 360 VTDEYGVAIH PLQHGASYYL VLFPSLFVFI * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.11011 | 0.0 | microspore-derived embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in the basal daughter cell of the zygote (PubMed:14711878). Unlike WOX2 and WOX8, it is not expressed in the egg cell or the zygote (PubMed:14711878). During two subsequent rounds of transverse cell divisions, it is restricted to the hypophysis (PubMed:14711878). At the 8-cell stage, it expands into the central domain of the embryo, in addition to weakening in the hypophysis (PubMed:14711878). After protoderm formation, expression in the central embryo domain is restricted to the protodermal cells and also disappears from the hypophyseal cell (PubMed:14711878). In subsequent stages, a ring of expression remains at the presumptive boundary between root and hypocotyl, at about the same position as WOX2 expression in heart stage embryos (PubMed:14711878). In addition to its embryonic expression, it is expressed postembryonically in the epidermal cells of the placenta during gynoecium development, but not in the developing ovules (PubMed:14711878). The placental expression disappears soon after fertilization (PubMed:14711878). Expression dynamics require MP and BDL, but not GN activity (PubMed:14711878). Detected as early as the first zygotic division in both the apical and the basal daughter cells (PubMed:17706632). By late globular to early transition stage, the protein is evenly distributed through out the embryo and the suspensor (PubMed:17706632). The basal half of the embryo, especially cells in the protoderm layer, starts to show slightly higher levels of expression by early heart stage (PubMed:17706632). {ECO:0000269|PubMed:14711878, ECO:0000269|PubMed:17706632}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the basal cell and later at the boundary between suspensor and proembryo (PubMed:14711878). Expressed at low levels in proliferating tissues post embryonically (PubMed:15753038). Detected in vegetative shoot apical meristem, leaf primordia, floral meristems, emerging floral organs, epidermal layer of the placenta and in the upper portion of the root meristematic zone (PubMed:15753038, PubMed:20110319). {ECO:0000269|PubMed:14711878, ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:20110319}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00084244001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013674880.1 | 0.0 | WUSCHEL-related homeobox 9-like isoform X2 | ||||
Swissprot | Q6X7J4 | 0.0 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A078JNV8 | 0.0 | A0A078JNV8_BRANA; BnaCnng62530D protein | ||||
STRING | Bo4g041330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7206 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 1e-179 | homeobox-3 |