PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00083997001

Common Name

GSBRNA2T00083997001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 336aa MW: 37880.7 Da PI: 8.0209

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00083997001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.1	7e-37	104	163	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynny++sqPr+fC+ C+ryWt GG++r vPvG+grrknk + GSBRNA2T00083997001 104 PDKILPCPRCNSGDTKFCYYNNYNVSQPRHFCRHCQRYWTSGGSMRSVPVGSGRRKNKGW 163 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	104	161	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-30	106	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.071	108	162	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	110	146	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSELRDTPIK LFGWTITSSL SPVLKDSSDH SMEYSSSSSF PSLGLHIMNN QSATDNSEQD 60 ITSLNISSDL NKESKETSEN SYDQHSEITT TTTSEEKTTE LKKPDKILPC PRCNSGDTKF 120 CYYNNYNVSQ PRHFCRHCQR YWTSGGSMRS VPVGSGRRKN KGWVSTDNYK HISSENNDYN 180 SSSTKILSFE SSDSCISAKG KHQPSDSNIT KYSVSQDFKK FHGFLPVQVT SSVSPPWPYH 240 QYPLNPSFYH IPVYWGYTVP VSSTLETSTC LGKRTRDELH TKMLESKDTS VRARLDSPSE 300 SINDDVSVED RATQQRATTG RACNVKHTLR RREIQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00083997001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189385	1e-163	AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009110034.1	0.0	PREDICTED: dof zinc finger protein DOF1.3-like
Swissprot	Q9LQX4	1e-131	DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBL	A0A078IB04	0.0	A0A078IB04_BRANA; BnaA08g19870D protein
STRING	Bra016286.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14082	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26790.1	1e-122	Dof family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]