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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00083952001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 254aa MW: 29748.7 Da PI: 6.8441 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3.1e-08 | 43 | 85 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+e+ el v+ k+ G++ W+t a mg + ++++k+ w+ GSBRNA2T00083952001 43 KGVWTKEDLELVVQHQKKRGND-WRTLADAMG--KHRNHVKDAWRR 85 799*******************.********9..7899***99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-6 | 9 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.876 | 38 | 87 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.97E-8 | 43 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.5E-10 | 46 | 104 | No hit | No description |
PROSITE profile | PS50090 | 6.702 | 88 | 156 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-5 | 92 | 156 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.72E-5 | 136 | 214 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.34 | 158 | 211 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVMNCKAHKQ VRGCWKEIAT ALPWRPYTGV YYRAHTLFEE GSKGVWTKED LELVVQHQKK 60 RGNDWRTLAD AMGKHRNHVK DAWRRIRLAS KKRGHWSMEE YQSLFDLVNK DLRIKVFKEK 120 HSKHGMLRDN IPWMAISDEL GTRDHAVCCL KWYDQLTSPM VAKGIWANVD DYRLLDELTN 180 LDAACVDDVD WDNILDNRDG DVCRSRWNQM VNHIGIPGSK TFAEQVEILS QRYCPDIAED 240 REDFDNRPFD PED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00083952001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013689979.1 | 0.0 | DNA ligase 1 | ||||
TrEMBL | A0A3P6CC72 | 0.0 | A0A3P6CC72_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g140750.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6327 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-157 | MYB_related family protein |