PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00083814001 | ||||||||
Common Name | GSBRNA2T00083814001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 26235 Da PI: 7.0752 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.9 | 6.3e-13 | 28 | 151 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +P+de +v++yLk ++++k +++ +e+++y+++Pw+ +a +++ yf + ++++ + gk a sg W+ +dk ++++ GSBRNA2T00083814001 28 EPEDEIMVSYYLKMMINNRKSWPDHFlrDEEANVYNLNPWSSF---NAPNSDRYFIFVKRRTDSCGKTDGSA--SGCWRIMARDKLIKCE 112 7****************9994443441145669*******974...44556777777777777777777665..8************998 PP NAM 96 .kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 +g+ g kk+L f + ++++ e+ vm+eyrl GSBRNA2T00083814001 113 eTGRILGFKKILKFCennkkRSKEEEEEEIICVMEEYRL 151 67888**********555333344455566789999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.083 | 21 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-9 | 27 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-18 | 29 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEDESIVSQE DMGDDYSILS SQEENQIEPE DEIMVSYYLK MMINNRKSWP DHFLRDEEAN 60 VYNLNPWSSF NAPNSDRYFI FVKRRTDSCG KTDGSASGCW RIMARDKLIK CEETGRILGF 120 KKILKFCENN KKRSKEEEEE EIICVMEEYR LVDKWKQDQV ICTIRELLQH EVTTLLAKHL 180 SFLPKWIKPF SRKHLMPMSH RRCGIYVYRI HQGMRSSRTI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00083814001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013658275.1 | 1e-122 | uncharacterized protein LOC106363008 | ||||
TrEMBL | A0A078I656 | 1e-163 | A0A078I656_BRANA; BnaA09g19790D protein | ||||
STRING | Bra029571.1-P | 1e-120 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18221 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60380.1 | 4e-45 | NAC family protein |
Publications ? help Back to Top | |||
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