![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00083685001 | ||||||||
Common Name | GSBRNA2T00083685001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 85aa MW: 9223.58 Da PI: 7.5164 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 34.4 | 5.2e-11 | 2 | 29 | 30 | 58 |
ZF-HD_dimer 30 psegeegtaaalkCaACgCHRnFHRreve 58 + +g+egta++l CaAC+ HR+FHR + + GSBRNA2T00083685001 2 S-SGKEGTAESLLCAACDFHRSFHRNKID 29 3.4899*******************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-12 | 1 | 38 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.7E-10 | 1 | 27 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 85 aa Download sequence Send to blast |
MSSGKEGTAE SLLCAACDFH RSFHRNKIDG MFVVKFNSFG LSPRPLVSRH VSPVMMSFAR 60 GGKDPAESST EDLNSFINLL VVME* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.10044 | 4e-46 | flower| microspore-derived embryo| seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00083685001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596192.1 | 3e-44 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 1e-34 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A078IAP8 | 1e-54 | A0A078IAP8_BRANA; BnaA07g02030D protein | ||||
TrEMBL | A0A3P6B3C7 | 5e-54 | A0A3P6B3C7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FEU3 | 5e-54 | M4FEU3_BRARP; Uncharacterized protein | ||||
STRING | Bra039615.1-P | 8e-55 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18350.1 | 5e-37 | homeobox protein 24 |
Publications ? help Back to Top | |||
---|---|---|---|
|