![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00083274001 | ||||||||
Common Name | GSBRNA2T00083274001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27764.1 Da PI: 10.3712 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g W + Ed++l+++v+q+G+++W+ I + + gRt+ +c+ rw + GSBRNA2T00083274001 18 KGLWKPFEDDKLKQLVEQYGPHNWNNIGQLLS-GRTGQSCRQRWCNQ 63 5779****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.4 | 1.6e-18 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T+eE+e+l++a++ +G++ W+ Ia+ ++ gRt++ +k++++ GSBRNA2T00083274001 70 KGPFTKEEEERLLEAHRIHGSR-WAYIAKLFP-GRTDNALKNHYRVT 114 79********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.789 | 13 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-12 | 17 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.32E-11 | 21 | 62 | No hit | No description |
Pfam | PF13921 | 5.3E-18 | 21 | 81 | No hit | No description |
PROSITE profile | PS51294 | 24.455 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-11 | 72 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-22 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MSRGSNSCDN KKTKGHRKGL WKPFEDDKLK QLVEQYGPHN WNNIGQLLSG RTGQSCRQRW 60 CNQLAPNINK GPFTKEEEER LLEAHRIHGS RWAYIAKLFP GRTDNALKNH YRVTMKRRKR 120 IGLSSTPTSP FNQIRSPIFP LPRLSHNLYP FQRYQMHNSR GPWPYTSASA PRSDQFGSSW 180 ISNAQQETDL YRRKSNELVV HQAATPDHEK NSSGEDGTSM IDHGEKRDVP FFDFLGVGLD 240 S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-31 | 18 | 118 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00083274001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013669270.2 | 1e-180 | transcription factor MYB105-like | ||||
TrEMBL | A0A078I9V1 | 0.0 | A0A078I9V1_BRANA; BnaA03g52540D protein | ||||
TrEMBL | A0A3P5ZUX1 | 0.0 | A0A3P5ZUX1_BRACM; Uncharacterized protein | ||||
STRING | Bra037004.1-P | 1e-178 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10133 | 20 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33450.1 | 5e-95 | myb domain protein 69 |
Publications ? help Back to Top | |||
---|---|---|---|
|