PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082989001
Common NameGSBRNA2T00082989001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 646aa    MW: 71939.5 Da    PI: 7.4361
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082989001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.33.4e-1282716391373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                          lv+lL+ c ea+++++ +++++++ar  elasp+g +pm+Rl+ay+teALa r+ar++++++++ pp++ +    +e+++al+++++v+P
  GSBRNA2T00082989001 271 LVNLLTGCLEAIRTRNIAAINHFIARTGELASPRGtTPMTRLIAYYTEALALRVARMWPHIFHITPPRDFE----DESANALRFLNQVTP 356
                          6899*******************************99********************************96....89999********** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          i+kf h taN+++l+a++g+ervHiiDfdi+qGlQWp+++q+Las p++p ++RiTgvg+    sk+el+etg+rL+ fAe+++++fef+
  GSBRNA2T00082989001 357 IPKFIHYTANSMLLRAFQGKERVHIIDFDIKQGLQWPSFFQSLASSPNPPRHVRITGVGE----SKHELNETGDRLHGFAEAMHLQFEFH 442
                          ************************************************************....9************************* PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + v++rled++l++L+vk+gEa+aVn+v q+h++l + +  +   +++  lv+s++P  vv++eqea+hns+++ +r++++l+yysa+fd
  GSBRNA2T00082989001 443 P-VVDRLEDVRLWMLHVKEGEAVAVNCVSQMHKTLYDGTGAAV--RDFAGLVRSTNPVAVVIAEQEAEHNSTQLETRVFNSLKYYSAVFD 529
                          *.7*******************************977766666..89******************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg..yrve...e 353
                           +++ l+++s  r+k+E++l+grei+n+vaceg++r+erh  +++Wr+++e+ GF+++ +se+++ q k+llr+++ +d+  ++ve   e
  GSBRNA2T00082989001 530 VMHKRLGADSLMRVKIEEVLFGREIRNIVACEGSHRQERHVGFGQWRRMMEQLGFRSLGVSEREVLQSKMLLRMYGdGDEefFNVErsdE 619
                          ****************************************************************************6555889**97766 PP

                 GRAS 354 esgslvlgWkdrpLvsvSaW 373
                          + g ++l W d+pL++vSaW
  GSBRNA2T00082989001 620 DGGGVTLRWLDQPLYTVSAW 639
                          678888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.126245614IPR005202Transcription factor GRAS
PfamPF035141.2E-125271639IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAAAAAATS SAVSVHFPMN TQRLDLPCSS SNFPRKETPT  60
NRPLGRSISL DNTNSNNSNN KTGGCSLKQS IKLPPLATTR GNADGFSWND NNNNRGTKSL  120
KRLAEDKEDE SCLSRVKRQR GETGDEHNMG FWFDHFSPAS LPFSLTCSGD NDDEKLISTQ  180
PLPGHPHWVN SVITELAGLG DKDIESSRPA SGSSTSASAE SHSFRHRVPV PTNGSRHPYS  240
QHGGGSTERR TIENINNNNN HRNDTQRDLE LVNLLTGCLE AIRTRNIAAI NHFIARTGEL  300
ASPRGTTPMT RLIAYYTEAL ALRVARMWPH IFHITPPRDF EDESANALRF LNQVTPIPKF  360
IHYTANSMLL RAFQGKERVH IIDFDIKQGL QWPSFFQSLA SSPNPPRHVR ITGVGESKHE  420
LNETGDRLHG FAEAMHLQFE FHPVVDRLED VRLWMLHVKE GEAVAVNCVS QMHKTLYDGT  480
GAAVRDFAGL VRSTNPVAVV IAEQEAEHNS TQLETRVFNS LKYYSAVFDV MHKRLGADSL  540
MRVKIEEVLF GREIRNIVAC EGSHRQERHV GFGQWRRMME QLGFRSLGVS EREVLQSKML  600
LRMYGDGDEE FFNVERSDED GGGVTLRWLD QPLYTVSAWS VGGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6327864026379Protein SCARECROW
5b3h_A1e-6327864025378Protein SCARECROW
5b3h_D1e-6327864025378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.225740.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082989001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113022.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A078I9980.0A0A078I998_BRANA; BnaA09g12920D protein
STRINGBra026999.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]