PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00082773001 | ||||||||
Common Name | GSBRNA2T00082773001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 308aa MW: 33699.4 Da PI: 6.3569 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.7e-14 | 44 | 93 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lrel+P++ +K + a+ L +++ Y+++Lq GSBRNA2T00082773001 44 RSKHSVTEQRRRSKINERFQVLRELIPNS----EQKRDTASFLLEVIGYVQYLQ 93 889*************************8....79******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-18 | 40 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.745 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-21 | 42 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.67E-13 | 44 | 97 | No hit | No description |
SMART | SM00353 | 1.1E-10 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSTGKGNQEE EDYGGEEDLG LKREGSSSAS RADAKDNDKA SAVRSKHSVT EQRRRSKINE 60 RFQVLRELIP NSEQKRDTAS FLLEVIGYVQ YLQEKVQKYE GSYPGWSQEP TKLTPWRNNH 120 WRVQSLASHP VAVNNGSAPV VPFPGKFEEI TVASAHATVA ELQNPVECDK GRAIASKSID 180 RQAELDDKGL PPLQPIHPLL HGEQANNTEC PATSDGIGLS DGLVIESGTI SISTVYSHEL 240 LSSLTQALQK AGIDLSHAKL SVQIDLGKRA NPSNKNLLTS DTEGATRSRN LSVEEDSEHS 300 HKRMRTL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.5267 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00082773001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352689 | 0.0 | AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127697.1 | 0.0 | PREDICTED: transcription factor BIM2-like isoform X1 | ||||
Swissprot | Q9CAA4 | 1e-159 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A078I7H6 | 0.0 | A0A078I7H6_BRANA; BnaA02g14220D protein | ||||
STRING | Bra038332.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5987 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-144 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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