PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082729001
Common NameGSBRNA2T00082729001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 229aa    MW: 25418.1 Da    PI: 4.0431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082729001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-1913101197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+   + ++s  + +p +f e+ + +   ++t +l+   g +W+v +  +k ++  ++t+GW++F+++++Lk+g+f++F +dg+++f
  GSBRNA2T00082729001  13 FFKVF--LSETASESMAIPMSFSEHLQDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKDGEFLTFVYDGSHTF 96 
                          88999..666777779******9655655..899****************..99998899************************998888 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                             v+vf
  GSBRNA2T00082729001  97 --EVSVF 101
                          ..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-258106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-239106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.73311104IPR003340B3 DNA binding domain
CDDcd100171.86E-2011101No hitNo description
PfamPF023627.8E-1713100IPR003340B3 DNA binding domain
SMARTSM010191.2E-2213104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSESEEEVDL PRFFKVFLSE TASESMAIPM SFSEHLQDPL PQTAKLQGIG GGVWTVSFKK  60
IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGLSGCKEMR AVVETVNLSD  120
ANSDEEEEEG DDDPSFDAGE DDEVSQGLCP VDSDETVSNA EGFSSLEVES NPCFTTTLKN  180
RIYELLIPAI VVKEHRLTFC DRIKYIDGEG IMYGAKGKWS DDRICFKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-201210610104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082729001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-118AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627737.11e-157PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV54e-78REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A078I9I21e-166A0A078I9I2_BRANA; BnaC03g16210D protein
TrEMBLA0A0D3B4181e-166A0A0D3B418_BRAOL; Uncharacterized protein
STRINGBo3g023970.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-79B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]