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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00082715001 | ||||||||
Common Name | GSBRNA2T00082715001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 235aa MW: 26670.5 Da PI: 6.1212 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.4 | 5.1e-15 | 159 | 203 | 24 | 68 |
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 + ++k +W+ v +++ erg+++sp+qC++k+++lnkr+kk+++++ GSBRNA2T00082715001 159 ALQRKSKWKFVFEVLFERGYHVSPQQCEDKFNDLNKRFKKLNDNR 203 4599*************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.7E-11 | 159 | 203 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVSIYIKICL PPPAFRDWDL WGPLDSAGSV LRQGFCVSGN PERLRSTADS FVQSLEGERD 60 ENSPQEGMVC GGALSYGSFD LQGSMRVHHH NPNSRPLESL SFTVVTAQTC NHNMPLTEQH 120 KGERENNSVS YDHEPSFSEE GGDGDDLSMD GGSRRKFAAL QRKSKWKFVF EVLFERGYHV 180 SPQQCEDKFN DLNKRFKKLN DNRLNLHHDL ALQHSVKLAF RNIDDQENDD FRNH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00082715001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013658809.1 | 1e-121 | uncharacterized protein LOC106363644 | ||||
TrEMBL | A0A078I7D1 | 1e-175 | A0A078I7D1_BRANA; BnaC04g22720D protein | ||||
STRING | Bo5g023990.1 | 1e-134 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-44 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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