PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00082651001 | ||||||||
Common Name | GSBRNA2T00082651001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 293aa MW: 33907.4 Da PI: 10.4158 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 125 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C ksF+ L +H t H GSBRNA2T00082651001 125 WKCGYCRKSFNEEKFLDQHFATrH 148 58*****************88877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.517 | 125 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 127 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MNQVYLKISH KQSFRRRRRH LRLFDGKTKG VKSRDSLLLL LFPLLLHHSL TKVLGESEST 60 REGNAQEIHC SRERSRAAWQ IIQDYLTPFV ERERYQIPNK CRLHPDNDLY RDQEQHKVHV 120 DVYEWKCGYC RKSFNEEKFL DQHFATRHYN LLNTTGTKCL ADLCGALHCD FVLMSSKKGK 180 IKCNPAAAAK NRHLCESLAN TCFPVSQGPA ASRLHEHFLR QFCDAHTCTG KNKPFPRGGK 240 KKSGVFYLAV SILTLMLLPL FYLLVFLHQR EKRTGTQVLR RIVKTGKKTK PS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.9344 | 0.0 | leaf| microspore| seed |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00082651001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618249.1 | 0.0 | PREDICTED: uncharacterized protein LOC106324810 | ||||
Refseq | XP_022571272.1 | 0.0 | uncharacterized protein LOC111213729 | ||||
TrEMBL | A0A078I9D1 | 0.0 | A0A078I9D1_BRANA; BnaC02g42440D protein | ||||
STRING | Bo2g165480.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4371 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-144 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|