|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GSBRNA2T00082326001 |
Common Name | GSBRNA2T00082326001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
CO-like |
Protein Properties |
Length: 290aa MW: 31540.6 Da PI: 7.8677 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00082326001 | genome | Genoscope | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 28.4 | 3.4e-09 | 4 | 47 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
r C+ + + ++lfC+ + +lC +C ++H H++v
GSBRNA2T00082326001 4 RPCDSCRSAAATLFCRADAAFLCGECDGKIHTAnklasrHERVL 47
68*****************************5577888888775 PP
|
2 | zf-B_box | 26.1 | 1.8e-08 | 47 | 91 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
C+ +e+ +++ C+ + lC +C +H+ H++vp+
GSBRNA2T00082326001 47 LLCQVCEQSPAHVTCKADAAALCVTCDRDIHSAnplsrrHERVPV 91
68*****************************66899999*99986 PP
|
3 | CCT | 68.9 | 1.3e-23 | 224 | 267 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
GSBRNA2T00082326001 224 REARVLRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKRT 267
9*****************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MASRPCDSCR SAAATLFCRA DAAFLCGECD GKIHTANKLA SRHERVLLCQ VCEQSPAHVT 60 CKADAAALCV TCDRDIHSAN PLSRRHERVP VTPFYDAPSN ADVSMEAASW LLHNPSVKEG 120 GVEIPNLFAD LDYSGVDPKM EASENSSGND GVVPVQTRAL FLSEDYFNFD ISASKTTFPH 180 GFSCINQTVS STSLDVPLVP EGGAVVEMSR TTATPALQLS PAEREARVLR YREKRKNRKF 240 EKTIRYASRK AYAEVRPRIK GRFAKRTDSR VNDGGEVGVY GGFGVVPSF*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AF052690 | 0.0 | AF052690.1 Raphanus sativus CONSTANS-like 1 protein (COL1) mRNA, complete cds. |