PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082319001
Common NameGSBRNA2T00082319001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 300aa    MW: 32735.3 Da    PI: 8.9025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082319001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.6e-1874163193
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f k  + +d+l + r +l+ +f++++g+ k++   +tl  ++g +W+v+l  +k++++  l+kGWk+F+kangLk+g+ ++++  + +++
  GSBRNA2T00082319001  74 FMKLKLAHDSLIKYRQYLSVPFMRANGMTKPG--LITLVGKDGAKWKVNLYEEKSGSSLCLGKGWKDFAKANGLKTGEYFTLESAW-KNE 160
                          6778888999999999**********999766..7***************44777777************************9666.444 PP

                          ..E CS
                   B3  91 elv 93 
                           ++
  GSBRNA2T00082319001 161 IPM 163
                          445 PP
2B343.65.4e-142112941197
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                           k + l lp +f++++g+kk +  t+tl  ++g +W   l    ++g++  + GW++F++ang+k gD++ + ++++ +++ +v+k+ 
  GSBRNA2T00082319001 211 VKACTLHLPSEFVTAIGIKKLG--TITLLGKDGMEWCGCL--LSRDGTVAVGVGWRNFCEANGVKLGDSFSLVFINEeEDTGPVFKFS 294
                          56689***********999655..9***************..999999************************9998879999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-1768164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-1871167IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-1872166No hitNo description
SMARTSM010191.5E-2374170IPR003340B3 DNA binding domain
PfamPF023623.6E-1674163IPR003340B3 DNA binding domain
PROSITE profilePS5086313.35274170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-14198295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-15199294IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-14201297IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787201296IPR003340B3 DNA binding domain
PfamPF023624.9E-12210294IPR003340B3 DNA binding domain
CDDcd100174.37E-12214294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNISETKVKT EVDSSSSDHP CPLALVTASN VRKDTQCLRQ DLCPTVSIHD GTQGDNNKKK  60
RRGRPPTSPS QKQFMKLKLA HDSLIKYRQY LSVPFMRANG MTKPGLITLV GKDGAKWKVN  120
LYEEKSGSSL CLGKGWKDFA KANGLKTGEY FTLESAWKNE IPMLSLVNTE SASDGKERGE  180
SSKAMEKERS TDTSSIVQNR VVTLALETKD VKACTLHLPS EFVTAIGIKK LGTITLLGKD  240
GMEWCGCLLS RDGTVAVGVG WRNFCEANGV KLGDSFSLVF INEEEDTGPV FKFSPNSGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082319001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573889.10.0B3 domain-containing protein REM12-like
SwissprotP0CAP46e-87REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078I6740.0A0A078I674_BRANA; BnaA04g14590D protein
TrEMBLA0A3P6CKX60.0A0A3P6CKX6_BRACM; Uncharacterized protein
STRINGBo4g154880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.12e-89B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]