PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00082314001 | ||||||||
Common Name | GSBRNA2T00082314001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 27402.2 Da PI: 8.3641 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.9 | 3.1e-12 | 8 | 66 | 33 | 97 |
-SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 33 sktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + t +l++ s +W+v++ + ++ r lt+GWkeF+ a++L++gD+v+F+ +++++f +v+++ GSBRNA2T00082314001 8 KNTAKLRSeASEMTWKVNI--EDGR-R--LTEGWKEFALAHDLRVGDIVIFRQERDMSF--HVTLL 66 3478888845669******..4444.3..9**********************8777888..77765 PP | |||||||
2 | B3 | 61.2 | 1.7e-19 | 143 | 238 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f++ +++++ +k++rl+lp f++++g++ e ++l l d++g +W+ l+ + +++r+ + +GWk+F kan Lk g+ ++Fkl+++ ++ GSBRNA2T00082314001 143 FVTLTVKPSDFKNSRLYLPMAFTKDNGINAE--TKLALLDKNGVKWSTDLRSEYNGKRIRMIGGWKKFFKANFLKIGEPIMFKLIWDGNT 230 7788899*******************99954..58***************9999999999999************************999 PP ..EEEEE- CS B3 91 elvvkvfr 98 ++v+k+++ GSBRNA2T00082314001 231 SCVLKLCS 238 99999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0013 | 1 | 69 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.323 | 1 | 69 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-9 | 3 | 66 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-21 | 7 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.0E-8 | 9 | 63 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-14 | 19 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-18 | 142 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.3E-19 | 143 | 238 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.26E-15 | 143 | 234 | No hit | No description |
Pfam | PF02362 | 2.4E-19 | 143 | 238 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-19 | 143 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.016 | 143 | 238 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEGRNDHKNT AKLRSEASEM TWKVNIEDGR RLTEGWKEFA LAHDLRVGDI VIFRQERDMS 60 FHVTLLGPSC CEIQYGSCID QDNNLGQFFI QKKNPKREEA ESSCFVANVT PSNLRYDRLE 120 SDEDSNHISS QERIEREDKK GGFVTLTVKP SDFKNSRLYL PMAFTKDNGI NAETKLALLD 180 KNGVKWSTDL RSEYNGKRIR MIGGWKKFFK ANFLKIGEPI MFKLIWDGNT SCVLKLCS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19140 | 2e-90 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00082314001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022573891.1 | 1e-168 | B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A078I8X7 | 1e-177 | A0A078I8X7_BRANA; BnaA04g14550D protein | ||||
STRING | Bra032079.1-P | 1e-169 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21465 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 3e-59 | B3 family protein |
Publications ? help Back to Top | |||
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